| Package Name | Access | Summary | Updated |
|---|---|---|---|
| gatk4 | public | Genome Analysis Toolkit (GATK4) | 2025-09-29 |
| mutalyzer_hgvs_parser | public | Mutalyzer HGVS variant description parser | 2025-09-29 |
| sccellfie | public | A tool for inferring metabolic activities from single-cell and spatial transcriptomics | 2025-09-29 |
| tomm40_wgs | public | TOMM40_WGS: Genotyping TOMM40’523 Poly-T Polymorphisms Using Whole-Genome Sequencing. | 2025-09-29 |
| varpubs | public | Tool for finding PubMed evidence on genetic variants and generating LLM-based summaries | 2025-09-29 |
| cleanifier | public | A fast lightweight tool to remove contamination using k-mers. | 2025-09-29 |
| snakemake-interface-logger-plugins | public | This package provides a stable interface for interactions between Snakemake and its logger plugins. | 2025-09-29 |
| lsabgc | public | lsaBGC-Pan - refined workflow for pan-BGC-omic evolutionary investigations. | 2025-09-29 |
| zol | public | zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters. | 2025-09-29 |
| binchicken | public | Targeted recovery of low abundance metagenome assembled genomes through intelligent coassembly | 2025-09-28 |
| plasmar | public | Plasmid Like Assembly Sequence Matching Algorithm for Resistance (PLASMAR) | 2025-09-28 |
| get_homologues | public | A versatile software package for pan-genome analysis, including GET_HOMOLOGUES and GET_HOMOLOGUES-EST | 2025-09-28 |
| r-dimsum | public | An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies | 2025-09-28 |
| ensembl-genomio | public | Ensembl GenomIO - tools to convert basic genomic data into Ensembl cores and back to flatfile | 2025-09-28 |
| sr2silo | public | Short-read to SILO format converter. | 2025-09-28 |
| mlstdb | public | A Python package to update and manage the MLST database for the MLST tool. | 2025-09-28 |
| clam | public | clam is a tool for classification of callable loci intervals, and accurate estimation of population genetic statistics. | 2025-09-27 |
| cats-rb | public | Reference-based transcriptome assembly quality assessment tool. | 2025-09-27 |
| cats-rf | public | Reference-free transcriptome assembly quality assessment tool. | 2025-09-27 |
| eva-sub-cli | public | EVA Submission Command Line Interface. | 2025-09-27 |
| vembrane | public | Filter VCF/BCF files with Python expressions. | 2025-09-27 |
| cryptogenotyper | public | This package crypto_typer: tool to subtype the parasite, Cryptosporidium, based on the 18S and gp60 markers. | 2025-09-27 |
| perl-extutils-parsexs | public | Converts Perl XS code into C code. | 2025-09-27 |
| spades | public | SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies. | 2025-09-27 |
| feems | public | Fast Estimation of Effective Migration Surfaces. | 2025-09-27 |
