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sdrf-pipelines
|
public |
Translate, convert SDRF to configuration pipelines
|
2025-02-16 |
|
truvari
|
public |
Structural variant comparison tool for VCFs
|
2025-02-16 |
|
fastoma
|
public |
FastOMA - a package to infer orthology information among proteomes
|
2025-02-16 |
|
galaxy-data
|
public |
The Galaxy models, datatype framework, and datatype implementations.
|
2025-02-16 |
|
tb-profiler
|
public |
Profiling tool for Mycobacterium tuberculosis to detect drug resistance and lineage from sequencing data
|
2025-02-16 |
|
galaxy-schema
|
public |
The Galaxy API schema objects.
|
2025-02-16 |
|
neffy
|
public |
A Python interface of NEFFy C++ tool: NEFF Calculator and MSA File Converter
|
2025-02-16 |
|
sevenbridges-python
|
public |
SBG API python client bindings
|
2025-02-16 |
|
pronto
|
public |
Python frontend to ontologies.
|
2025-02-16 |
|
bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-02-16 |
|
pbsim3
|
public |
A simulator for all types of Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) long reads
|
2025-02-15 |
|
tir-learner
|
public |
An ensemble pipeline for terminal inverted repeat (TIR) transposable elements annotation.
|
2025-02-15 |
|
hitac
|
public |
A hierarchical taxonomic classifier for fungal ITS sequences
|
2025-02-15 |
|
genomad
|
public |
Identification of mobile genetic elements
|
2025-02-15 |
|
egap
|
public |
EGAP pipeline for genome assembly and QC analysis
|
2025-02-15 |
|
svaba
|
public |
Structural variation and indel detection by local assembly
|
2025-02-15 |
|
snakemake-executor-plugin-slurm-jobstep
|
public |
A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)
|
2025-02-15 |
|
annembed
|
public |
annembed is an ultra-fast and scalable non-linear dimension reduction/embedding algorithm (similar to UMAP or t-SNE) for large-scale biological data
|
2025-02-15 |
|
metabolights-utils
|
public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
|
2025-02-15 |
|
vitap
|
public |
Viral Taxonomic Assignment Pipeline
|
2025-02-15 |
|
chopper
|
public |
A rust command line for filtering and trimming long reads.
|
2025-02-15 |
|
seismic-rna
|
public |
SEISMIC-RNA software by the Rouskin Lab.
|
2025-02-15 |
|
snp2cell
|
public |
A package for finding enriched regulatory networks from GWAS and single cell data.
|
2025-02-15 |
|
r-metacoder
|
public |
A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy).
|
2025-02-14 |
|
snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2025-02-14 |
|
ucsc-cell-browser
|
public |
A browser for single-cell data, main site at http://cells.ucsc.edu. UCSC Cellbrowser, an interactive browser for single cell data. Includes importers and basic pipelines for text files, Seurat, Scanpy and Cellranger. All Javascript - does not require a server backend.
|
2025-02-14 |
|
galaxy-objectstore
|
public |
The Galaxy object store framework and default implementations
|
2025-02-14 |
|
vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2025-02-14 |
|
macs2
|
public |
Model Based Analysis for ChIP-Seq data
|
2025-02-14 |
|
pbstarphase
|
public |
A phase-aware pharmacogenomic diplotyper for PacBio sequencing data
|
2025-02-14 |
|
autobigs-engine
|
public |
A library to rapidly fetch fetch MLST profiles given sequences for various diseases.
|
2025-02-14 |
|
t-coffee
|
public |
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
|
2025-02-14 |
|
pathogen-profiler
|
public |
Library giving access to classes and functions to create a profiling tool to look for mutations from NGS data.
|
2025-02-14 |
|
sainsc
|
public |
Segmentation-free Analysis of In Situ Capture data.
|
2025-02-14 |
|
pybiolib
|
public |
BioLib Python Client
|
2025-02-14 |
|
galaxy-files
|
public |
The Galaxy file sources framework and default plugins.
|
2025-02-14 |
|
jbrowse2
|
public |
The JBrowse 2 Genome Browser
|
2025-02-14 |
|
varlociraptor
|
public |
Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
|
2025-02-14 |
|
fastobo
|
public |
Faultless AST for Open Biomedical Ontologies in Python
|
2025-02-14 |
|
ribotin
|
public |
Ribosomal DNA assembly tool
|
2025-02-14 |
|
tagbam
|
public |
A tool for tagging BAM files.
|
2025-02-14 |
|
muat
|
public |
A package for Mutation Attention Tool
|
2025-02-14 |
|
mbuffer
|
public |
mbuffer is a tool for buffering data streams with a large set of unique features
|
2025-02-14 |
|
prymer
|
public |
Python Primer Design Library
|
2025-02-13 |
|
intarna
|
public |
Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites
|
2025-02-13 |
|
randfold
|
public |
No Summary
|
2025-02-13 |
|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner.
|
2025-02-13 |
|
fgpyo
|
public |
Python bioinformatics and genomics library
|
2025-02-13 |
|
wakhan
|
public |
A tool to analyze haplotype-specific chromosome-scale somatic copy number aberrations and aneuploidy using long reads
|
2025-02-13 |
|
locityper
|
public |
Targeted genotyper for complex polymorphic loci from short and long read WGS.
|
2025-02-12 |
