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uvp
|
public |
A Unified Variant Pipeline to identify variants and assign lineage from MTBC sequence data.
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2023-06-16 |
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kounta
|
public |
Generate multi-sample k-mer count matrix
|
2023-06-16 |
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aquila_stlfr
|
public |
Diploid assembly and variants calling for stLFR and hybrid assembler for both linked-reads.
|
2023-06-16 |
|
vmatch
|
public |
The Vmatch large scale sequence analysis software
|
2023-06-16 |
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bioconductor-easyqpcr
|
public |
EasyqpcR for low-throughput real-time quantitative PCR data analysis
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2023-06-16 |
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bioconductor-conumee
|
public |
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
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2023-06-16 |
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phylocsf
|
public |
Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
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2023-06-16 |
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legsta
|
public |
In silico Legionella pneumophila Sequence Based Typing
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2023-06-16 |
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jasmine
|
public |
Jasmine: a Java pipeline for isomiR characterization in miRNA-Seq Data
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2023-06-16 |
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biopython.convert
|
public |
Interconvert various file formats supported by BioPython
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2023-06-16 |
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scrublet
|
public |
Doublet prediction in single-cell RNA-sequencing data
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2023-06-16 |
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python-htsget
|
public |
Python API and command line interface for the GA4GH htsget API.
|
2023-06-16 |
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bioconductor-mafdb.gnomad.r2.1.grch38
|
public |
Minor allele frequency data from gnomAD release 2.1 for GRCh38
|
2023-06-16 |
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feature_merge
|
public |
Merge features in GFF files
|
2023-06-16 |
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blacksheep-outliers
|
public |
A package for differential extreme values analysis
|
2023-06-16 |
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bioconductor-epihet
|
public |
Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data
|
2023-06-16 |
|
bioconductor-mcagui
|
public |
Microbial Community Analysis GUI
|
2023-06-16 |
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bioconductor-precisiontrialdrawer
|
public |
A Tool to Analyze and Design NGS Based Custom Gene Panels
|
2023-06-16 |
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pepquery
|
public |
PepQuery is a peptide-centric search engine for novel peptide identification and validation.
|
2023-06-16 |
|
spliceai-wrapper
|
public |
A caching wrapper for Illumina SpliceAI.
|
2023-06-16 |
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pylca
|
public |
Lowest common ancestor (LCA) algorithm implementation in python
|
2023-06-16 |
|
bioconductor-gapgom
|
public |
GAPGOM (novel Gene Annotation Prediction and other GO Metrics)
|
2023-06-16 |
|
karyopype
|
public |
Chromosomal visualization in Python.
|
2023-06-16 |
|
bioconductor-deco
|
public |
Decomposing Heterogeneous Cohorts using Omic Data Profiling
|
2023-06-16 |
|
bioconductor-probatch
|
public |
Tools for Diagnostics and Corrections of Batch Effects in Proteomics
|
2023-06-16 |
|
mace
|
public |
Model Based Analysis for ChIP-exo data
|
2023-06-16 |
|
spliceai
|
public |
A deep learning-based tool to identify splice variants.
|
2023-06-16 |
|
crypto_typer
|
public |
This package crypto_typer: tool to subtype the parasite, Cryptosporidium, based on the 18S and gp60 markers.
|
2023-06-16 |
|
cmsip
|
public |
A package for detecting differential 5hmC regions from CMS-IP sequencing data.
|
2023-06-16 |
|
graph2pro-var
|
public |
meta-proteogenomic identification from mass spec and metagenomic/transcriptomic data
|
2023-06-16 |
|
bioconductor-omicslonda
|
public |
Omics Longitudinal Differential Analysis
|
2023-06-16 |
|
moabs
|
public |
Methylation analysis on Bisulfite-Sequencing reads
|
2023-06-16 |
|
bioconductor-cytofast
|
public |
cytofast - A quick visualization and analysis tool for CyTOF data
|
2023-06-16 |
|
chiron
|
public |
A deep neural network basecaller for nanopore sequencing.
|
2023-06-16 |
|
bioconductor-hcabrowser
|
public |
Browse the Human Cell Atlas data portal
|
2023-06-16 |
|
bioconductor-coregflux
|
public |
CoRegFlux
|
2023-06-16 |
|
bioconductor-scalign
|
public |
An alignment and integration method for single cell genomics
|
2023-06-16 |
|
bioconductor-netboost
|
public |
Network Analysis Supported by Boosting
|
2023-06-16 |
|
bioconductor-mofa
|
public |
Multi-Omics Factor Analysis (MOFA)
|
2023-06-16 |
|
ezclermont
|
public |
easily determine the Clermont 2013 E coli phylotype
|
2023-06-16 |
|
bioconductor-potra
|
public |
PoTRA: Pathways of Topological Rank Analysis
|
2023-06-16 |
|
plasmidfinder
|
public |
PlasmidFinder allows identification of plasmids in total or partial sequenced isolates of bacteria.
|
2023-06-16 |
|
sesimcmc
|
public |
Motif finding with modified MCMC
|
2023-06-16 |
|
mapgl
|
public |
Prediction of lineage-specific gain and loss of sequence elements using phylogenetic maximum parsimony.
|
2023-06-16 |
|
dinosaur
|
public |
Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.
|
2023-06-16 |
|
python-bioformats
|
public |
Read and write life sciences file formats
|
2023-06-16 |
|
perl-pdf-table
|
public |
A utility class for building table layouts in a PDF::API2 object.
|
2023-06-16 |
|
fargene
|
public |
Fragmented Antibiotic Resistance Gene iENntifiEr takes either fragmented metagenomic data or longer sequences as input and predicts and delivers full-length antiobiotic resistance genes as output
|
2023-06-16 |
|
sccaf
|
public |
Single-Cell Clustering Assessment Framework
|
2023-06-16 |
|
ultraheatmap
|
public |
ultraheatmaps facilitates the production of deepTools heatmaps
|
2023-06-16 |
