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dnaweaver_synbiocad
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public |
Build the genetic designs generated by the SynBioCAD project using either Golden Gate or Gibson assembly
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2023-06-16 |
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longqc
|
public |
LongQC is a tool for the data quality control of the PacBio and ONT long reads
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2023-06-16 |
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igda-script
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public |
The wrapper script of iGDA to detect and phase minor SNVs from long-read sequencing data
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2023-06-16 |
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dnaweaver
|
public |
Python library to find optimal strategies for assembling large DNA constructs.
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2023-06-16 |
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hamroaster
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public |
An analysis pipeline to compare the output of different AMR detection tools and provide metrics of their performance
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2023-06-16 |
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mcroni
|
public |
mcr-1 analysis
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2023-06-16 |
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cutqc
|
public |
generate aggregated fastqc report of both before and after trimming.
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2023-06-16 |
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corsid
|
public |
Core Sequence Identifier
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2023-06-16 |
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sequana_pipetools
|
public |
A set of tools to help building or using Sequana pipelines
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2023-06-16 |
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genview
|
public |
Gene-centric visualization tool for genomic sequences
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2023-06-16 |
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biobb_remote
|
public |
Biobb_remote is the Biobb module for remote execution via ssl.
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2023-06-16 |
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mhg
|
public |
MHG is an annotation-free graph-based tool to merge and partition homologous groups.
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2023-06-16 |
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turbocor
|
public |
A command line tool to compute very large correlation matrices.
|
2023-06-16 |
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perl-xxx
|
public |
See Your Data in the Nude
|
2023-06-16 |
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perl-moosex-strictconstructor
|
public |
Make your object constructors blow up on unknown attributes
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2023-06-16 |
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perl-io-pager
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public |
Select a pager (possibly perl-based) & pipe it text if a TTY
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2023-06-16 |
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proksee
|
public |
Proksee is a suite of command line tools for performing assembly, annotation and visualization of microbial genomes.
|
2023-06-16 |
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how_are_we_stranded_here
|
public |
Python package for testing strandedness of RNA-Seq fastq files
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2023-06-16 |
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cirtap
|
public |
A CLI to handle PATRIC data from the FTP
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2023-06-16 |
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isafe
|
public |
A program for identifying a favored mutation in positive selective sweep.
|
2023-06-16 |
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cpt_gffparser
|
public |
A Biopython extension package for I/O of GFF files
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2023-06-16 |
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liv_utils
|
public |
Liverpool University Basic Tools
|
2023-06-16 |
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colord
|
public |
A versatile compressor of third generation sequencing reads.
|
2023-06-16 |
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bakdrive
|
public |
Bakdrive finds a minimum set of driver species from real metagenomic samples and simulates fecal microbial transplantation (FMT) process
|
2023-06-16 |
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interproscan
|
public |
InterPro integrates together predictive information about proteins function from a number of partner resources
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2023-06-16 |
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hormon
|
public |
A tool for annotation of alpha satellite arrays in centromeres of a newly assembled human genome.
|
2023-06-16 |
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staphb_toolkit
|
public |
A ToolKit of commonly used Public Health Bioinformatics Tools
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2023-06-16 |
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bamr
|
public |
A lightweight Python3 bam reader library
|
2023-06-16 |
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vafator
|
public |
VAFator annotates the variants in a VCF file with technical annotations extracted from one or more BAM alignment files. We implement a set of basic coverage annotations and also more sophisticated published annotations used to assess the quality of every variant call.
|
2023-06-16 |
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examine
|
public |
A graphical application to visually analyze network modules.
|
2023-06-16 |
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nanospring
|
public |
NanoSpring is a compression tool for nanopore reads in Fastq files
|
2023-06-16 |
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nerpa
|
public |
A tool for discovering biosynthetic gene clusters of nonribosomal peptides
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2023-06-16 |
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ginpipepy
|
public |
Package for temporal binning of dated sequences in BAM format and fast population size estimate computation
|
2023-06-16 |
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seq2onehot
|
public |
Encode biological sequences to a one-hot numpy array
|
2023-06-16 |
|
onehot2seq
|
public |
Decode a one-hot numpy array to biological sequences
|
2023-06-16 |
|
harvest-variants
|
public |
Harvest Variants is a pipeline for variant calling on SARS-CoV-2 samples
|
2023-06-16 |
|
bird_tool_utils_python
|
public |
Python utilities used as part of the bird suite of bioinformatic tools.
|
2023-06-16 |
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liquorice
|
public |
A tool for bias correction and quantification of changes in coverage around regions of interest in cfDNA WGS datasets
|
2023-06-16 |
|
pifcosm
|
public |
PisCoSm is a pipeline to construct supermatrix trees from GenBank data
|
2023-06-16 |
|
clearcnv
|
public |
CNV calling package
|
2023-06-16 |
|
mars
|
public |
Multiple Alignment-based Refinement of SVs (MARS)
|
2023-06-16 |
|
emeraldbgc
|
public |
SMBGC detection tool
|
2023-06-16 |
|
opfi
|
public |
A package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics datasets.
|
2023-06-16 |
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pathogentrack
|
public |
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data
|
2023-06-16 |
|
gff3toddbj
|
public |
Create a DDBJ annotation file from GFF3 and FASTA files
|
2023-06-16 |
|
autogenes
|
public |
Automatic Gene Selection for Bulk Deconvolution.
|
2023-06-16 |
|
needle
|
public |
Needle: A fast and space-efficient pre-filter for the quantification of very large collections of nucleotide sequences
|
2023-06-16 |
|
calcs
|
public |
Append minimap2's CS tag to a SAM file.
|
2023-06-16 |
|
rust-mdbg
|
public |
An ultra-fast minimizer-space de Bruijn graph (mdBG) implementation, geared towards the assembly of long and accurate reads.
|
2023-06-16 |
|
proteomiqon-labelfreeproteinquantification
|
public |
The tool LabelFreeProteinQuantification estimates protein abundances using quantified peptide ions.
|
2023-06-16 |
