| Package Name | Access | Summary | Updated |
|---|---|---|---|
| pango-designation | public | Repository for suggesting new lineages that should be added to the current scheme. | 2025-09-11 |
| straglr | public | Short-tandem repeat genotyping using long reads | 2025-09-10 |
| tobias | public | Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal. | 2025-09-10 |
| sequali | public | Fast sequencing quality metrics | 2025-09-10 |
| dfast | public | DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline | 2025-09-10 |
| varpubs | public | Tool for finding PubMed evidence on genetic variants and generating LLM-based summaries | 2025-09-10 |
| dpcstruct | public | Unsupervised clustering algorithm for identifying and classifying protein domains based on structural similarity. | 2025-09-10 |
| tagra | public | TaGra: TAbular data preprocessing to GRAph representation. | 2025-09-10 |
| cdst | public | CoDing Sequence Typer (CDST): MD5 hash-based genome typing and clustering. | 2025-09-10 |
| alloshp | public | From mapped reads to Single Homeologous Polymorphisms (SHPs): pipeline for phylogenetic studies of allopolyploids | 2025-09-10 |
| lexicmap | public | efficient sequence alignment against millions of prokaryotic genomes | 2025-09-10 |
| neat | public | Toolset for generating synthethic FASTQ, VCF and BAM files. | 2025-09-10 |
| mity | public | Mity is a bioinformatic analysis pipeline designed to call mitochondrial SNV and INDEL variants from Whole Genome Sequencing (WGS) data. | 2025-09-10 |
| porechop_abi | public | Adapter inferrence and removal of Oxford Nanopore reads. | 2025-09-10 |
| marti | public | Metagenomic Analysis in Real Time | 2025-09-10 |
| gaftools | public | gaftools is a fast and comprehensive toolkit designed for processing pangenome alignments in GAF format | 2025-09-10 |
| gsmap | public | gsMap (genetically informed spatial mapping of cells for complex traits). | 2025-09-10 |
| metabolabpy | public | Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis. | 2025-09-10 |
| pegas | public | PeGAS is a Snakemake pipeline for genome analysis | 2025-09-10 |
| nanomotif | public | Identifying methlyation motifs in nanopore data | 2025-09-10 |
| perl-mce | public | Many-Core Engine for Perl providing parallel processing capabilities | 2025-09-10 |
| perl-image-exiftool | public | ExifTool is a platform-independent Perl library plus a command-line application for reading, writing and editing meta information in a wide variety of files. | 2025-09-10 |
| sierra-local | public | sierra-local is a Python3 implementation of the Stanford HIVdb Sierra service for generating drug resistance predictions from HIV-1 sequences. | 2025-09-10 |
| phyling | public | A phylogenetic inference tool based on protein-coding genomic sequences | 2025-09-10 |
| 3seq | public | 3SEQ tests all sequence triplets in an alignment for a mosaic recombination signal. | 2025-09-10 |
