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bftools
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public |
Bio-Formats Command line tools
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2024-11-06 |
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argparse2tool
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public |
Instrument for forming Galaxy XML and CWL tool descriptions from argparse arguments
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2024-11-05 |
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pangolin
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public |
Phylogenetic Assignment of Named Global Outbreak LINeages
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2024-11-05 |
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snipe
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public |
SRA-Scale sequence QC and analysis
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2024-11-05 |
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perl-ole-storage_lite
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public |
Read and write OLE storage files.
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2024-11-05 |
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seqspec
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public |
File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.
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2024-11-05 |
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perl-url-encode
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public |
Encoding and decoding of application/x-www-form-urlencoded encoding.
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2024-11-05 |
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bubblegun
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public |
BubbleGun is a tool for detecting bubbles and superbubbles in GFA graphs, and reports them and their nested structures.
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2024-11-05 |
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tinscan
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public |
Find alignment signatures characteristic of transposon insertion sites.
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2024-11-05 |
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decom
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public |
decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral samples using k-mer-based methods
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2024-11-05 |
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tiberius
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public |
Tiberius is a programme for quantifying and analysing genetic sequence data.
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2024-11-04 |
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mimeo
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public |
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
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2024-11-04 |
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buscolite
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public |
buscolite: busco analysis for gene predictions
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2024-11-04 |
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nf-test
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public |
nf-test is a simple test framework for Nextflow pipelines.
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2024-11-04 |
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gfftk
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public |
GFFtk: genome annotation GFF3 tool kit
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2024-11-04 |
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eagle2
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public |
The Eagle software estimates haplotype phase either within a genotyped cohort or using a phased reference panel.
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2024-11-04 |
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bioutils
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public |
miscellaneous simple bioinformatics utilities and lookup tables
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2024-11-04 |
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msa4u
|
public |
A simple visualisation tool for Multiple Sequence Alignment.
|
2024-11-03 |
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seqkit
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public |
a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
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2024-11-03 |
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gsmap
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public |
gsMap (genetically informed spatial mapping of cells for complex traits)
|
2024-11-02 |
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taxonkit
|
public |
A Cross-platform and Efficient NCBI Taxonomy Toolkit
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2024-11-02 |
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csvtk
|
public |
A cross-platform, efficient, practical CSV/TSV toolkit
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2024-11-02 |
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fgsv
|
public |
Tools to find evidence for structural variation.
|
2024-11-02 |
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fgbio
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
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2024-11-02 |
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lotus2
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public |
LotuS2 is a lightweight complete 16S/18S/ITS pipeline
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2024-11-02 |
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fgbio-minimal
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2024-11-02 |
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phykit
|
public |
PhyKIT is a UNIX shell toolkit for processing and analyzing phylogenomic data.
|
2024-10-31 |
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tirmite
|
public |
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
|
2024-10-31 |
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gatk4-spark
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public |
Genome Analysis Toolkit (GATK4)
|
2024-10-31 |
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gatk4
|
public |
Genome Analysis Toolkit (GATK4)
|
2024-10-31 |
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gcnvkernel
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public |
Python package to support GATK gCNV calling.
|
2024-10-31 |
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spring
|
public |
Spring is a compression tool for Fastq files
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2024-10-30 |
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r-recetox-aplcms
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public |
apLCMS is a software which generates a feature table from a batch of LC/MS spectra. A modified fork of the original apLCMS by Tianwei Yu.
|
2024-10-30 |
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r-mfassignr
|
public |
The MFAssignR package was designed for multi-element molecular formula (MF)
assignment of ultrahigh resolution mass spectrometry measurements.
A number of tools for internal mass recalibration, MF assignment, signal-to-noise evaluation,
and unambiguous formula selections are provided.
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2024-10-30 |
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ampd-up
|
public |
De novo antimicrobial peptide sequence generation with recurrent neural networks
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2024-10-30 |
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doubletdetection
|
public |
Method to detect and enable removal of doublets from single-cell RNA-sequencing.
|
2024-10-30 |
|
phenograph
|
public |
Graph-based clustering for high-dimensional single-cell data.
|
2024-10-29 |
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stxtyper
|
public |
Accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
|
2024-10-29 |
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pyscenic
|
public |
Python implementation of the SCENIC pipeline for transcription factor inference from single-cell transcriptomics experiments.
|
2024-10-29 |
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geosketch
|
public |
Geometry-preserving random sampling.
|
2024-10-29 |
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pbsv
|
public |
pbsv - PacBio structural variant (SV) calling and analysis tools
|
2024-10-29 |
|
pbtk
|
public |
pbtk - PacBio BAM toolkit
|
2024-10-29 |
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pbmarkdup
|
public |
pbmarkdup - Mark duplicate reads from PacBio sequencing of an amplified library
|
2024-10-29 |
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tides-ml
|
public |
Tool for ORF-calling and ORF-classification using ML approaches.
|
2024-10-29 |
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pgscatalog-utils
|
public |
Utilities for working with PGS Catalog API and scoring files
|
2024-10-29 |
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flippyr
|
public |
This package is designed to align a PLINK fileset with a FASTA reference genome.
|
2024-10-29 |
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massdash
|
public |
MassDash is a streamlined DIA mass spec visualization, analysis, optimization, and rapid prototyping.
|
2024-10-29 |
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pgscatalog.core
|
public |
Core tools for working with polygenic scores (PGS) and the PGS Catalog
|
2024-10-29 |
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corneto
|
public |
CORNETO: A Unified Framework for Omics-Driven Network Inference
|
2024-10-29 |
|
kaptive
|
public |
Reports information about surface polysaccharide loci for Klebsiella pneumoniae species complex and Acinetobacter baumannii genome assemblies.
|
2024-10-28 |
