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esme_mpich_4_2_3
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public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
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2025-03-25 |
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esme_hdf5_mpich_4_2_3
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public |
HDF5 - Hierarchical Data Format 5
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2025-03-25 |
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esme_pio_mpich_4_2_3
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public |
ParallelIO - High-level parallel I/O library
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2025-03-25 |
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esme_netcdf-fortran_mpich_4_2_3
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public |
NetCDF-Fortran - netCDF interface for Fortran
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2025-03-25 |
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esme_netcdf-c_mpich_4_2_3
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public |
NetCDF-C - netCDF interface for C
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2025-03-25 |
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adas
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public |
adas is a sequence database search engine for long sequences. It is an innovative application of Minimizer, MinHash, Coreset and Hierarchical Navigable Small World Graphs (HNSW)
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2025-03-25 |
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corona_lineage_dynamics
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public |
Analyzing and visualizing pangolin lineages of GISAID metadata.
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2025-03-25 |
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vpt-segmentation-packing
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public |
Packs cell boundaries for the Vizgen vzg2 file format
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2025-03-25 |
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muset
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public |
A pipeline for building an abundance unitig matrix from FASTA/FASTQ files
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2025-03-25 |
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ctyper
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public |
Genotyping sequence-resolved copy-number variation using pangenomes.
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2025-03-25 |
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spp-dcj
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public |
A tool for solving the small parsimony problem for natural genomes
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2025-03-25 |
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a3partitioner
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public |
A bioinformatics tool for creating APOBEC3 and non-APOBEC3 partitions
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2025-03-25 |
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egap
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public |
EGAP pipeline for genome assembly and QC analysis
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2025-03-25 |
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pb-cpg-tools
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public |
Collection of tools for the analysis of CpG data
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2025-03-25 |
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get_pangenes
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public |
A versatile software package for calling pangenes from whole genome alignments
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2025-03-25 |
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haplogrep3
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public |
A tool for mtDNA haplogroup classification.
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2025-03-25 |
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frag_gene_scan_rs
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public |
Rust implementation of the gene prediction model for short and error-prone reads
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2025-03-25 |
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autobigs-cli
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public |
A CLI tool to rapidly fetch fetch MLST profiles given sequences for various diseases.
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2025-03-25 |
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autobigs-engine
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public |
A library to rapidly fetch fetch MLST profiles given sequences for various diseases.
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2025-03-25 |
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nafcodec
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public |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files.
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2025-03-25 |
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grepq
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public |
Quickly filter FASTQ files.
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2025-03-25 |
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eastr
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public |
Tool for emending alignments of spuriously spliced transcript reads.
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2025-03-25 |
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linkedsv
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public |
A novel structural variant caller for 10X Genomics (linked-read) sequencing data
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2025-03-25 |
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ourotools
|
public |
A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data
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2025-03-25 |
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biobb_morph
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public |
biobb_morph is the Biobb module collection to perform molecular dynamics simulations using the morph MD suite.
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2025-03-25 |
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qimba
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public |
Toolkit for metabarcoding analyses
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2025-03-25 |
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octopusv
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public |
OctopusV: Advanced Structural Variant Analysis Toolkit
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2025-03-25 |
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geomloss
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public |
Geometric loss functions between point clouds, images and volumes.
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2025-03-25 |
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memopair
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public |
A package for identifying methylated motif pairs
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2025-03-25 |
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mrtrix3
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public |
A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
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2025-03-25 |
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snakebids
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public |
BIDS integration into snakemake workflows
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2025-03-25 |
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seg-suite
|
public |
The seg suite provides tools for manipulating segments, alignments, and annotations of sequences.
|
2025-03-25 |
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glean-gene
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public |
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.
|
2025-03-25 |
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r-scroshi
|
public |
scROSHI: robust supervised hierarchical identification of single cells
|
2025-03-25 |
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isorefiner
|
public |
A refinement tool to identify exon-intron structures of transcript (RNA) isoforms using long reads
|
2025-03-25 |
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excludonfinder
|
public |
A tool for identifying and analyzing excludons in genomic data using RNA-seq data.
|
2025-03-25 |
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primalbedtools
|
public |
A collection of tools for working with primer.bed files
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2025-03-25 |
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pylipid
|
public |
PyLipID - A Python Library For Lipid Interaction Analysis
|
2025-03-25 |
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unifeb
|
public |
unifeb is an non-linear dimension reduction/embedding algorithm for UniFrac distance. It is ultra-fast and scalable.
|
2025-03-25 |
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bioconductor-mosdef
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public |
MOSt frequently used and useful Differential Expression Functions
|
2025-03-25 |
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bioconductor-epiregulon.extra
|
public |
Companion package to epiregulon with additional plotting, differential and graph functions
|
2025-03-25 |
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bioconductor-scdiagnostics
|
public |
Cell type annotation diagnostics
|
2025-03-25 |
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bioconductor-enrichdo
|
public |
a Global Weighted Model for Disease Ontology Enrichment Analysis
|
2025-03-25 |
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bioconductor-camutqc
|
public |
An R Package for Comprehensive Filtration and Selection of Cancer Somatic Mutations
|
2025-03-25 |
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bioconductor-broadseq
|
public |
broadSeq : for streamlined exploration of RNA-seq data
|
2025-03-25 |
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bioconductor-tidyspatialexperiment
|
public |
SpatialExperiment with tidy principles
|
2025-03-25 |
|
bioconductor-prone
|
public |
The PROteomics Normalization Evaluator
|
2025-03-25 |
|
bioconductor-msbackendmetabolights
|
public |
Retrieve Mass Spectrometry Data from MetaboLights
|
2025-03-25 |
|
bioconductor-omicsmlrepor
|
public |
Search harmonized metadata created under the OmicsMLRepo project
|
2025-03-25 |
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bioconductor-holofoodr
|
public |
R interface to EBI HoloFood resource
|
2025-03-25 |
