| Package Name | Access | Summary | Updated |
|---|---|---|---|
| gsearch | public | gsearch is an ultra-fast and scalable microbial genome search program based on MinHash-like metrics and graph-based approximate nearest neighbor search | 2025-09-13 |
| tmb | public | This tool was designed to calculate a Tumor Mutational Burden (TMB) score from a VCF file. | 2025-09-13 |
| carveme | public | CarveMe: automated genome-scale metabolic model reconstruction | 2025-09-13 |
| nucflag | public | NucFlag misassembly identifier. | 2025-09-13 |
| atol-bpa-datamapper | public | Map data from the BPA data portal for AToL's Genome Engine. | 2025-09-13 |
| delve-bio | public | A variant caller for mixed infections | 2025-09-13 |
| vcf2maf | public | Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms. | 2025-09-13 |
| pangolin-data | public | Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments | 2025-09-13 |
| open-cravat | public | OpenCRAVAT - variant analysis toolkit | 2025-09-13 |
| eggnog-mapper | public | Fast genome-wide functional annotation through orthology assignment. | 2025-09-13 |
| captus | public | Captus: Assembly of Phylogenomic Datasets from High-Throughput Sequencing data. | 2025-09-13 |
| quaqc | public | Quick ATAC-seq Quality Control. | 2025-09-13 |
| meteor | public | Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. | 2025-09-13 |
| gseapy | public | Gene Set Enrichment Analysis in Python. | 2025-09-13 |
| pyjess | public | Cython bindings and Python interface to JESS, a 3D template matching software. | 2025-09-13 |
| perl-excel-writer-xlsx | public | Create a new file in the Excel 2007+ XLSX format. | 2025-09-13 |
| suvtk | public | Tool to submit viral sequences to Genbank. | 2025-09-13 |
| snakemake-interface-storage-plugins | public | This package provides a stable interface for interactions between Snakemake and its storage plugins. | 2025-09-13 |
| fufihla | public | HLA typing pipeline for long reads (FuFiHLA) with a location-aware CLI. | 2025-09-13 |
| libcifpp | public | Library containing code to manipulate mmCIF and PDB files. | 2025-09-13 |
| snakemake-executor-plugin-kubernetes | public | A snakemake executor plugin for submission of jobs to Kubernetes. | 2025-09-13 |
| pmultiqc | public | Python package for quality control of proteomics datasets, based on multiqc package | 2025-09-13 |
| cryptogenotyper | public | This package crypto_typer: tool to subtype the parasite, Cryptosporidium, based on the 18S and gp60 markers. | 2025-09-12 |
| annotsv | public | Annotation and Ranking of Structural Variation. | 2025-09-12 |
| gtdbtk | public | A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. | 2025-09-12 |
