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ucsc-twobitinfo
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public |
Get information about sequences in a .2bit file.
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2024-10-25 |
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ucsc-twobittofa
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public |
Convert all or part of .2bit file to fasta.
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2024-10-25 |
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ucsc-fatotwobit
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public |
Convert DNA from fasta to 2bit format.
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2024-10-25 |
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biobb_flexdyn
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public |
Biobb_flexdyn is a BioBB category for studies on the conformational landscape of native proteins.
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2024-10-25 |
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famsa
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public |
Algorithm for large-scale multiple sequence alignments.
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2024-10-25 |
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blaze2
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public |
Barcode identification from (Nanopore) Long reads for AnalyZing single-cell gene Expression.
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2024-10-25 |
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ggcat
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public |
Compacted and colored de Bruijn graph construction and querying.
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2024-10-24 |
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augustus
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public |
AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments.
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2024-10-24 |
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fgpyo
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public |
Python bioinformatics and genomics library
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2024-10-24 |
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spaln
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public |
Map and align a set of cDNA/EST or protein sequences onto a genome
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2024-10-24 |
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cytoscape
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public |
Cytoscape: an open source platform for network analysis and visualization.
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2024-10-24 |
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neat
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public |
Toolset for generating synthethic FASTQ, VCF and BAM files.
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2024-10-24 |
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vsearch
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public |
A versatile open source tool for metagenomics (USEARCH alternative)
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2024-10-24 |
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tissuumaps
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public |
TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images
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2024-10-24 |
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snippy
|
public |
Rapid bacterial SNP calling and core genome alignments
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2024-10-24 |
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auspice
|
public |
Auspice is an open-source interactive tool for visualising phylogenomic data
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2024-10-24 |
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assembly_finder
|
public |
Snakemake-powered cli pipeline to download genomes with NCBI datasets
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2024-10-24 |
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genmod
|
public |
Annotate genetic inheritance models in variant files
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2024-10-24 |
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steamboat
|
public |
A collection of tools/scripts for microbial bioinformatics
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2024-10-24 |
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tantan
|
public |
tantan masks simple regions (low complexity & short-period tandem repeats) in biological sequences.
|
2024-10-24 |
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last
|
public |
LAST finds & aligns related regions of sequences.
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2024-10-24 |
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marti
|
public |
Metagenomic Analysis in Real Time
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2024-10-24 |
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sawfish
|
public |
Structural variant discovery and genotyping from mapped PacBio HiFi data
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2024-10-24 |
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srahunter
|
public |
srahunter is a tool for processing SRA accession numbers.
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2024-10-24 |
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mikrokondo-tools
|
public |
A collection of utilities to make using the mikrokondo pipeline easier
|
2024-10-23 |
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r-spacexr
|
public |
Cell type identification and cell type-specific differential expression in spatial transcriptomics
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2024-10-23 |
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pggb
|
public |
PanGenome Graph Building pipeline renders
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2024-10-23 |
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mkdesigner
|
public |
Genome-wide design of markers for PCR-based genotyping from NGS data.
|
2024-10-23 |
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biobb_flexserv
|
public |
Biobb_flexserv is the Biobb module collection for biomolecular flexibility studies on protein 3D structures.
|
2024-10-23 |
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mgnify-pipelines-toolkit
|
public |
Collection of scripts and tools for MGnify pipelines
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2024-10-23 |
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panacus
|
public |
panacus is a tool for computing counting statistics for GFA files.
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2024-10-23 |
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macsyfinder
|
public |
MacSyFinder: Detection of macromolecular systems in protein datasets using systems modelling and similarity search
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2024-10-23 |
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snakedeploy
|
public |
Helper for deploying published Snakemake pipelines.
|
2024-10-23 |
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d4tools
|
public |
The D4 command line utility program
|
2024-10-23 |
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submission-excel2xml
|
public |
Generate DRA metadata XML files from Excel spreadsheet
|
2024-10-23 |
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pykofamsearch
|
public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
|
2024-10-22 |
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pyfastani
|
public |
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
|
2024-10-22 |
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clinvar-this
|
public |
ClinVar Submission API Made Easy.
|
2024-10-22 |
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r-saccharis
|
public |
A rendering package for creating phylogenetic trees from SACCHARIS .json and .tree files, in the R statistical computing language.
|
2024-10-22 |
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viennarna
|
public |
ViennaRNA package -- RNA secondary structure prediction and comparison
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2024-10-22 |
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r-grbase
|
public |
The 'gRbase' package provides graphical modelling features used by e.g. the packages 'gRain', 'gRim' and 'gRc'. 'gRbase' implements graph algorithms including (i) maximum cardinality search (for marked and unmarked graphs). (ii) moralization, (iii) triangulation, (iv) creation of junction tree. 'gRbase' facilitates array operations, 'gRbase' implements functions for testing for conditional independence. 'gRbase' illustrates how hierarchical log-linear models may be implemented and describes concept of graphical meta data. The facilities of the package are documented in the book by Højsgaard, Edwards and Lauritzen (2012, <doi:10.1007/978-1-4614-2299-0>) and in the paper by Dethlefsen and Højsgaard, (2005, <doi:10.18637/jss.v014.i17>). Please see 'citation("gRbase")' for citation details. NOTICE 'gRbase' requires that the packages graph, 'Rgraphviz' and 'RBGL' are installed from 'bioconductor'; for installation instructions please refer to the web page given below.
|
2024-10-22 |
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peaks2utr
|
public |
A robust, parallelized Python CLI for annotating three_prime_UTR
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2024-10-22 |
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mofapy2
|
public |
Multi-Omics Factor Analysis
|
2024-10-22 |
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trim-galore
|
public |
Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control
|
2024-10-22 |
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hificnv
|
public |
Copy number variant caller and depth visualization utility for PacBio HiFi reads
|
2024-10-22 |
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gw
|
public |
View genomic sequencing data and vcf files
|
2024-10-22 |
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telosearchlr
|
public |
TeloSearchLR (telomere search using long sequencing reads) is a Python script for aiding the identificaiton of telomeric repeat motifs.
|
2024-10-22 |
|
hictk
|
public |
Blazing fast toolkit to work with .hic and .cool files
|
2024-10-22 |
|
scoring-matrices
|
public |
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
|
2024-10-22 |
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rosella
|
public |
Metagenomic binning pipeline and algorithm using UMAP and HDBSCAN
|
2024-10-22 |
