| Package Name | Access | Summary | Updated |
|---|---|---|---|
| dingii | public | Computing the Rearrangement Distance of Natural Genomes. | 2025-04-22 |
| rhotermpredict | public | RhoTermPredict (Barrick Lab Fork) | 2025-04-22 |
| promotercalculator | public | Promoter-Calculator (Barrick Lab Fork) | 2025-04-22 |
| ncbi-stxtyper | public | StxTyper identifies and types Stx operons from assembled genomic sequence. | 2025-04-22 |
| cytotrace2-python | public | CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data. | 2025-04-22 |
| phylodeep | public | Deep-learning parameter estimation and model selection from phylogenetic trees. | 2025-04-22 |
| bcgtree | public | Automatized phylogenetic tree building from bacterial core genomes | 2025-04-22 |
| kin | public | A tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias. | 2025-04-22 |
| phylodeep_data_bdei | public | Package containing data for the phylodeep package. | 2025-04-22 |
| phylodeep_data_bd | public | Package containing data for the phylodeep package. | 2025-04-22 |
| phylodeep_data_bdss | public | Package containing data for the phylodeep package. | 2025-04-22 |
| graphbin2 | public | GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs | 2025-04-22 |
| radtk | public | A collection of tools for working with RAD files. | 2025-04-22 |
| grenedalf | public | Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments | 2025-04-22 |
| plasnet | public | Clustering, visualising and exploring plasmid networks | 2025-04-22 |
| snakeatac_env | public | snakemake based ATACseq pipeline | 2025-04-22 |
| clusty | public | Clusty is a tool for large-scale data clustering. | 2025-04-22 |
| rpsbproc | public | RpsbProc, the post-RPSBLAST Processing Utility. | 2025-04-22 |
| diphase | public | A diploid genome phasing tool | 2025-04-22 |
| subset-bam | public | A tool to subset a 10x Genomics BAM file based on a tag, most commonly the cell barcode tag. | 2025-04-22 |
| scspectra | public | Supervised discovery of interpretable gene programs from single-cell data. | 2025-04-22 |
| neodisambiguate | public | Disambiguate reads that were mapped to multiple references. | 2025-04-22 |
| taseq | public | Downstream analysis for targetted amplicon sequencing. | 2025-04-22 |
| pacu_snp | public | PACU is a workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data. | 2025-04-22 |
| carpedeam | public | CarpeDeam - A metagenomic assembler for heavily damaged ancient datasets | 2025-04-22 |
