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phylodeep
|
public |
Deep-learning parameter estimation and model selection from phylogenetic trees.
|
2025-04-22 |
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bcgtree
|
public |
Automatized phylogenetic tree building from bacterial core genomes
|
2025-04-22 |
|
kin
|
public |
A tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.
|
2025-04-22 |
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phylodeep_data_bdei
|
public |
Package containing data for the phylodeep package.
|
2025-04-22 |
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phylodeep_data_bd
|
public |
Package containing data for the phylodeep package.
|
2025-04-22 |
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phylodeep_data_bdss
|
public |
Package containing data for the phylodeep package.
|
2025-04-22 |
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graphbin2
|
public |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
|
2025-04-22 |
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radtk
|
public |
A collection of tools for working with RAD files.
|
2025-04-22 |
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grenedalf
|
public |
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
|
2025-04-22 |
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plasnet
|
public |
Clustering, visualising and exploring plasmid networks
|
2025-04-22 |
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snakeatac_env
|
public |
snakemake based ATACseq pipeline
|
2025-04-22 |
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clusty
|
public |
Clusty is a tool for large-scale data clustering.
|
2025-04-22 |
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rpsbproc
|
public |
RpsbProc, the post-RPSBLAST Processing Utility.
|
2025-04-22 |
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diphase
|
public |
A diploid genome phasing tool
|
2025-04-22 |
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subset-bam
|
public |
A tool to subset a 10x Genomics BAM file based on a tag, most commonly the cell barcode tag.
|
2025-04-22 |
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scspectra
|
public |
Supervised discovery of interpretable gene programs from single-cell data.
|
2025-04-22 |
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neodisambiguate
|
public |
Disambiguate reads that were mapped to multiple references.
|
2025-04-22 |
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taseq
|
public |
Downstream analysis for targetted amplicon sequencing.
|
2025-04-22 |
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pacu_snp
|
public |
PACU is a workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.
|
2025-04-22 |
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carpedeam
|
public |
CarpeDeam - A metagenomic assembler for heavily damaged ancient datasets
|
2025-04-22 |
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r-mfassignr
|
public |
The MFAssignR package was designed for multi-element molecular formula (MF)
assignment of ultrahigh resolution mass spectrometry measurements.
A number of tools for internal mass recalibration, MF assignment, signal-to-noise evaluation,
and unambiguous formula selections are provided.
|
2025-04-22 |
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rcx-tk
|
public |
This package adjusts and cleans the metadata file provided by a user.
|
2025-04-22 |
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eskrim
|
public |
ESKRIM: EStimate with K-mers the RIchness in a Microbiome
|
2025-04-22 |
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ctxcore
|
public |
Core functions for pycisTarget and the SCENIC tool suite.
|
2025-04-22 |
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seacells
|
public |
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data.
|
2025-04-22 |
