|
r-signac
|
public |
A framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis. Reference: Stuart and Butler et al. (2019) <doi:10.1016/j.cell.2019.05.031>.
|
2025-03-28 |
|
perl-math-bigint
|
public |
Arbitrary size floating point math package
|
2025-03-28 |
|
slivar
|
public |
filter/annotate variants in VCF/BCF format with simple expressions
|
2025-03-28 |
|
commec
|
public |
commec: a free, open-source, globally available tool for DNA sequence screening
|
2025-03-28 |
|
pisad
|
public |
pisad - Phsaed Intraspecies Sample Anomalies Detection tool
|
2025-03-28 |
|
planemo
|
public |
Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/).
|
2025-03-28 |
|
vsnp3
|
public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
|
2025-03-28 |
|
ena-webin-cli
|
public |
Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI).
|
2025-03-28 |
|
rpsbproc
|
public |
RpsbProc, the post-RPSBLAST Processing Utility.
|
2025-03-28 |
|
pybiolib
|
public |
BioLib Python Client
|
2025-03-28 |
|
pegasuspy
|
public |
An efficient Python analysis tool which scales to transcriptomes of millions of single cells.
|
2025-03-28 |
|
amiga
|
public |
Analysis of Microbial Growth Assays
|
2025-03-28 |
|
iow
|
public |
Implementation of Balanced Parentheses
|
2025-03-28 |
|
sc-musketeers
|
public |
A tri-partite modular autoencoder for addressing imbalanced cell type annotation and batch effect reduction
|
2025-03-28 |
|
mi-pimento
|
public |
A PrIMEr infereNce TOolkit to facilitate large-scale calling of metabarcoding amplicon sequence variants
|
2025-03-28 |
|
mgnify-pipelines-toolkit
|
public |
Collection of scripts and tools for MGnify pipelines.
|
2025-03-28 |
|
seq2squiggle
|
public |
End-to-end simulation of nanopore sequencing signals with feed-forward transformers
|
2025-03-28 |
|
novae
|
public |
Graph-based foundation model for spatial transcriptomics data
|
2025-03-28 |
|
lovis4u
|
public |
Loci Visualisation Tool.
|
2025-03-28 |
|
psauron
|
public |
PSAURON: a machine learning model for rapid assessment of protein coding gene annotation
|
2025-03-28 |
|
olivar
|
public |
Olivar PCR tiling design
|
2025-03-28 |
|
pybwa
|
public |
Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa.
|
2025-03-28 |
|
spacerextractor
|
public |
Extract CRISPR spacers from metagenome short reads.
|
2025-03-28 |
|
bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-03-28 |
|
mlstdb
|
public |
A Python package to update and manage the MLST database for the MLST tool.
|
2025-03-27 |
