|
nail
|
public |
Profile Hidden Markov Model (pHMM) biological sequence alignment tool
|
2025-04-22 |
|
skder
|
public |
skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes
|
2025-04-22 |
|
twilight
|
public |
TWILIGHT: A high throughput tool for tall and wide multiple sequence alignment.
|
2025-04-22 |
|
iseq
|
public |
iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
|
2025-04-22 |
|
gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2025-04-22 |
|
merquryfk
|
public |
MerquryFK replaces meryl with the FastK k-mer counter suite to considerably speed up analyses.
|
2025-04-22 |
|
fastk
|
public |
FastK is a k‑mer counter that is optimized for processing high quality DNA assembly data sets such as those produced with an Illumina instrument or a PacBio run in HiFi mode.
|
2025-04-22 |
|
taxonomy
|
public |
Python and Rust library for loading, saving, and manipulating taxonomic trees.
|
2025-04-22 |
|
recon
|
public |
No Summary
|
2025-04-22 |
|
hymet
|
public |
HYMET (Hybrid Metagenomic Tool) for taxonomic identification of metagenomic sequences.
|
2025-04-22 |
|
aster
|
public |
Accurate Species Tree EstimatoR series; a family of optimation algorithms
for species tree inference implemented in C++.
|
2025-04-22 |
|
cogclassifier
|
public |
Classify prokaryote protein sequences into COG functional category.
|
2025-04-22 |
|
perl-moosex-types
|
public |
Organise your Moose types in libraries.
|
2025-04-22 |
|
truvari
|
public |
Structural variant comparison tool for VCFs.
|
2025-04-22 |
|
bioconductor-dnacopy
|
public |
DNA Copy Number Data Analysis
|
2025-04-22 |
|
bioconductor-variantannotation
|
public |
Annotation of Genetic Variants
|
2025-04-22 |
|
bioconductor-metapod
|
public |
Meta-Analyses on P-Values of Differential Analyses
|
2025-04-22 |
|
bioconductor-bluster
|
public |
Clustering Algorithms for Bioconductor
|
2025-04-22 |
|
bioconductor-apeglm
|
public |
Approximate posterior estimation for GLM coefficients
|
2025-04-22 |
|
bioconductor-scuttle
|
public |
Single-Cell RNA-Seq Analysis Utilities
|
2025-04-22 |
|
bioconductor-biocneighbors
|
public |
Nearest Neighbor Detection for Bioconductor Packages
|
2025-04-22 |
|
bioconductor-biocsingular
|
public |
Singular Value Decomposition for Bioconductor Packages
|
2025-04-22 |
|
bioconductor-scran
|
public |
Methods for Single-Cell RNA-Seq Data Analysis
|
2025-04-22 |
|
ervmancer
|
public |
Quantifies HERV short read RNA sequencing expression data
|
2025-04-22 |
|
bioconductor-rhdf5
|
public |
R Interface to HDF5
|
2025-04-22 |
|
bioconductor-hdf5array
|
public |
HDF5 datasets as array-like objects in R
|
2025-04-22 |
|
bioconductor-sparsematrixstats
|
public |
Summary Statistics for Rows and Columns of Sparse Matrices
|
2025-04-22 |
|
rdeval
|
public |
A general purpose, multithreaded read analysis and manipulation tool.
|
2025-04-22 |
|
perl-alien-build
|
public |
Build external dependencies for use in CPAN
|
2025-04-22 |
|
perl-aceperl
|
public |
Object-Oriented Access to ACEDB Databases
|
2025-04-22 |
|
perl-params-validate
|
public |
Validate method/function parameters
|
2025-04-22 |
|
hmftools-cider
|
public |
Determine a comprehensive list of CDR3 sequences for each of the IG and TCR loci from RNA and DNA sequence data.
|
2025-04-22 |
|
hmftools-teal
|
public |
Characterises telomeres in tumor and normal samples from WGS data.
|
2025-04-22 |
|
bioconductor-biovizbase
|
public |
Basic graphic utilities for visualization of genomic data.
|
2025-04-22 |
|
rust-gtars
|
public |
Performance-critical tools to manipulate, analyze, and process genomic interval data.
|
2025-04-22 |
|
pigpen
|
public |
A package to quantify RNA localization using OINC-seq data.
|
2025-04-22 |
|
bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-04-22 |
|
zol
|
public |
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters.
|
2025-04-21 |
|
r-cobrar
|
public |
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
|
2025-04-21 |
|
open-cravat
|
public |
OpenCRAVAT - variant analysis toolkit
|
2025-04-21 |
|
gsmap
|
public |
gsMap (genetically informed spatial mapping of cells for complex traits).
|
2025-04-21 |
|
gtotree
|
public |
GToTree is a user-friendly workflow for phylogenomics.
|
2025-04-21 |
|
dmox
|
public |
Rust-based demultiplexing of haplotagging linked-read data.
|
2025-04-21 |
|
bioconductor-shortread
|
public |
FASTQ input and manipulation
|
2025-04-21 |
|
annembed
|
public |
annembed is an ultra-fast and scalable non-linear dimension reduction/embedding algorithm (similar to UMAP or t-SNE) for large-scale biological data
|
2025-04-21 |
|
bioconductor-beachmat
|
public |
Compiling Bioconductor to Handle Each Matrix Type
|
2025-04-21 |
|
bioconductor-rhdf5filters
|
public |
HDF5 Compression Filters
|
2025-04-21 |
|
r-dimsum
|
public |
An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
|
2025-04-21 |
|
bioconductor-pwalign
|
public |
Perform pairwise sequence alignments
|
2025-04-21 |
|
bioconductor-dada2
|
public |
Accurate, high-resolution sample inference from amplicon sequencing data
|
2025-04-21 |
