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visceral-evaluatesegmentation
|
public |
EvaluateSegmentation is a tool that compares two volumes (a test segmentation and a ground truth segmentation) using 22 different metrics that were selected as a result of a comprehensive research into the metrics used in the medical volume segmentations.
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2025-09-22 |
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pbiotools
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public |
Miscellaneous bioinformatics and other supporting utilities for Python 3.
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2025-09-22 |
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dbcan
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public |
Standalone version of dbCAN annotation tool for automated CAZyme annotation.
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2025-09-22 |
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spoa
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public |
SIMD partial order alignment tool/library.
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2025-09-22 |
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pcaone
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public |
PCAone - Principal Component Analysis All in One.
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2025-09-22 |
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chromsize
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public |
just get your chrom sizes
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2025-09-22 |
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lrge
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public |
Genome size estimation from long read overlaps
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2025-09-22 |
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bigtools
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public |
Bigtools provides a high-level, performant API for reading and writing bigWig and bigBed files.
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2025-09-21 |
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survivor
|
public |
Toolset for SV simulation, comparison and filtering
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2025-09-21 |
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decifer
|
public |
DeCiFer simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF)
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2025-09-21 |
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expansionhunter
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public |
A tool for estimating repeat sizes
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2025-09-21 |
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vt
|
public |
A tool set for short variant discovery in genetic sequence data
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2025-09-21 |
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stringdecomposer
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public |
A tool for decomposing of strings into a set of given monomers
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2025-09-21 |
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quatradis
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public |
A set of tools to analyse the output from TraDIS analyses
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2025-09-21 |
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albatradis
|
public |
Comparative TraDIS analysis.
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2025-09-21 |
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gangstr
|
public |
GangSTR is a tool for genome-wide profiling tandem repeats from short reads.
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2025-09-21 |
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espresso
|
public |
ESPRESSO (Error Statistics PRomoted Evaluator of Splice Site Options) processes long read RNA-seq data
|
2025-09-21 |
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snakemake-executor-plugin-cannon
|
public |
A Snakemake executor plugin for submitting jobs to the Cannon cluster at Harvard University.
|
2025-09-21 |
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sigprofilerassignment
|
public |
SigProfilerAssignment - Assignment of known mutational signatures to individual samples and individual somatic mutations
|
2025-09-20 |
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concoct
|
public |
Clustering cONtigs with COverage and ComposiTion
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2025-09-20 |
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sigprofilerextractor
|
public |
Extracts mutational signatures from mutational catalogues.
|
2025-09-20 |
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comparem2
|
public |
CompareM2 genomes-to-report pipeline
|
2025-09-20 |
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rust-gtars
|
public |
Performance-critical tools to manipulate, analyze, and process genomic interval data.
|
2025-09-20 |
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snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2025-09-20 |
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cawlign
|
public |
A tool for aligning consensus sequences to reference genomes.
|
2025-09-20 |
