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asgal
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public |
A graph aligner
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2024-12-16 |
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orfipy
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public |
orfipy: fast and flexible search for open reading frames in fasta sequences
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2024-12-15 |
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genomedata
|
public |
Tools for accessing large amounts of genomic data
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2024-12-15 |
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mycotools
|
public |
Comparative genomics automation and standardization software.
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2024-12-15 |
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fastremap-bio
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public |
FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool.
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2024-12-15 |
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haptools
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public |
Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
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2024-12-15 |
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metilene
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public |
Fast and sensitive detection of differential DNA methylation
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2024-12-15 |
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oncocnv
|
public |
a package to detect copy number changes in Deep Sequencing data
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2024-12-15 |
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svdss
|
public |
Structural Variant Discovery from Sample-specific Strings.
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2024-12-15 |
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crispritz
|
public |
CRISPRitz, tool package for CRISPR experiments assessment and analysis.
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2024-12-15 |
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minimac4
|
public |
Computationally efficient genotype imputation
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2024-12-15 |
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pecat
|
public |
A phased error correction and assembly tool
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2024-12-15 |
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ribotaper
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public |
RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet periodicity of ribosomal footprints to call translated regions.
|
2024-12-15 |
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perl-retroseq
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public |
RetroSeq: discovery and genotyping of TEVs from reads in BAM format.
|
2024-12-15 |
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sequenza-utils
|
public |
Analysis of cancer sequencing samples, utilities for the R package sequenza
|
2024-12-15 |
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dunovo
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public |
Du Novo: A pipeline for processing duplex sequencing data.
|
2024-12-15 |
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probeit
|
public |
Probeit: a probe designer for detecting and genotyping pathogen!!!
|
2024-12-15 |
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sneep
|
public |
Identify regulatory non-coding SNPs (rSNPs)
|
2024-12-15 |
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hydra-multi
|
public |
Hydra detects structural variation breakpoints in both unique and duplicated genomic regions.
|
2024-12-15 |
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stare-abc
|
public |
Calculate Gene-TF affinities via enhancer-gene interactions
|
2024-12-15 |
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bwread
|
public |
Read bigwig files quickly into PyRanges or DataFrames
|
2024-12-15 |
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batvi
|
public |
Detect viral integrations
|
2024-12-15 |
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difcover
|
public |
Pipeline to identify genomic regions with read coverage differences between pairs of samples
|
2024-12-15 |
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r-bedtoolsr
|
public |
R package wrapping bedtools
|
2024-12-15 |
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bioconductor-ndexr
|
public |
NDEx R client library
|
2024-12-15 |
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r-umi4c
|
public |
Process UMI-4C data from scratch to produce nice plots.
|
2024-12-15 |
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bioconductor-dupradar
|
public |
Assessment of duplication rates in RNA-Seq datasets
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2024-12-15 |
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snikt
|
public |
Identify and remove adapter/systemic contamination in metagenomic sequencing DNA/RNA data.
|
2024-12-15 |
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genome_updater
|
public |
genome_updater: bash script to download/update snapshots of refseq/genbank
|
2024-12-15 |
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rascaf
|
public |
No Summary
|
2024-12-15 |
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demuxlet
|
public |
Genetic multiplexing of barcoded single cell RNA-seq
|
2024-12-15 |
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fastq_utils
|
public |
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
|
2024-12-15 |
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soapdenovo-trans
|
public |
No Summary
|
2024-12-15 |
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minys
|
public |
MinYS allows targeted assembly of bacterial genomes using a reference-guided pipeline.
|
2024-12-15 |
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pbipa
|
public |
Improved Phased Assembly
|
2024-12-15 |
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psiclass
|
public |
Simultaneous multi-sample transcript assembler for RNA-seq data
|
2024-12-15 |
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galaxy-ml
|
public |
APIs for Galaxy machine learning tools
|
2024-12-15 |
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perl-set-intervaltree
|
public |
An interval tree implementation in PERL.
|
2024-12-15 |
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bioconductor-tanggle
|
public |
Visualization of Phylogenetic Networks
|
2024-12-15 |
|
bioconductor-ggtreedendro
|
public |
Drawing 'dendrogram' using 'ggtree'
|
2024-12-15 |
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coinfinder
|
public |
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
|
2024-12-15 |
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bioconductor-ggtreeextra
|
public |
An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"
|
2024-12-15 |
|
bioconductor-philr
|
public |
Phylogenetic partitioning based ILR transform for metagenomics data
|
2024-12-15 |
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r-fastbaps
|
public |
A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
|
2024-12-15 |
|
bioconductor-sitepath
|
public |
Phylogeny-based sequence clustering with site polymorphism
|
2024-12-15 |
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bioconductor-clstutils
|
public |
Tools for performing taxonomic assignment
|
2024-12-15 |
|
rnabridge-align
|
public |
A tool to construct the alignments of entire fragments given the alignments of paired-end reads.
|
2024-12-15 |
|
bcftools
|
public |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
|
2024-12-15 |
|
expansionhunterdenovo
|
public |
ExpansionHunter Denovo (EHdn) is a suite of tools for detecting novel expansions of short tandem repeats (STRs).
|
2024-12-15 |
|
lumpy-sv-minimal
|
public |
A general probabilistic framework for structural variant discovery. This package contains only the lumpy executable
|
2024-12-15 |
