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esme_hdf5_openmpi_5_0_6
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public |
HDF5 - Hierarchical Data Format 5
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2025-02-21 |
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ensembl-py
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public |
Ensembl Python base library
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2025-02-21 |
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gapseq
|
public |
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
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2025-02-21 |
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deeplc
|
public |
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
|
2025-02-21 |
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hmftools-neo
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public |
Identification of neoepitope and calculation of allele specific neoepitope binding and presentation likelihood.
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2025-02-21 |
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needletail
|
public |
Fast FASTX parsing in Python
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2025-02-21 |
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metacache
|
public |
MetaCache is a classification system for mapping genomic sequences (short reads, long reads, contigs, ...) from metagenomic samples to their most likely taxon of origin.
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2025-02-21 |
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profile_dists
|
public |
Profile Dists: Rapid calcualtion of allele profile distances and distance base querying
|
2025-02-20 |
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mgikit
|
public |
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
|
2025-02-20 |
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micomplete
|
public |
Quality control of assembled genomes
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2025-02-20 |
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icfree-ml
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public |
Design of experiments (DoE) and machine learning packages for the iCFree project
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2025-02-20 |
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scarap
|
public |
A toolkit for prokaryotic comparative genomics
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2025-02-20 |
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tbtamr
|
public |
A tool implementing TB-Profiler for reporting of genomic DST for M. tuberculosis in a CPHL
|
2025-02-20 |
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bioconductor-bambu
|
public |
Context-Aware Transcript Quantification from Long Read RNA-Seq data
|
2025-02-20 |
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hmftools-orange
|
public |
ORANGE summarizes the key outputs from all algorithms in the Hartwig suite.
|
2025-02-20 |
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r-ukbrapr
|
public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
|
2025-02-20 |
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dajin2
|
public |
One-step genotyping tools for targeted long-read sequencing
|
2025-02-20 |
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vcflib
|
public |
Command-line tools for manipulating VCF files.
|
2025-02-19 |
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shapeit5
|
public |
Fast and accurate method for estimation of haplotypes (phasing)
|
2025-02-19 |
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perl-template-toolkit
|
public |
Comprehensive template processing system.
|
2025-02-19 |
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mlstdb
|
public |
A Python package to update and manage the MLST database for the MLST tool.
|
2025-02-19 |
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hmftools-redux
|
public |
Post-processing read alignments to control sequencing errors and biases
|
2025-02-19 |
|
vcfexpress
|
public |
expressions on VCFs
|
2025-02-19 |
|
libssw
|
public |
An SIMD Smith-Waterman C/C++/Python/Java Library for Use in Genomic Applications.
|
2025-02-19 |
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consent
|
public |
Scalable long read self-correction and assembly polishing with multiple sequence alignment
|
2025-02-19 |
|
quast
|
public |
Quality Assessment Tool for Genome Assemblies
|
2025-02-19 |
|
perl-specio
|
public |
Type constraints and coercions for Perl
|
2025-02-19 |
|
genmap
|
public |
Ultra-fast computation of genome mappability.
|
2025-02-19 |
|
pupmapper
|
public |
Tool & python package for calculating genome wide pileup mappability.
|
2025-02-19 |
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seqlib
|
public |
C++ interface to HTSlib, BWA-MEM and Fermi.
|
2025-02-18 |
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genomad
|
public |
Identification of mobile genetic elements.
|
2025-02-18 |
|
kraken2
|
public |
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
|
2025-02-18 |
|
gappa
|
public |
Genesis Applications for Phylogenetic Placement Analysis
|
2025-02-18 |
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clipkit
|
public |
Alignment trimming software for phylogenetics.
|
2025-02-18 |
|
gencove
|
public |
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis. This command-line interface can be used to easily access the Gencove API.
|
2025-02-18 |
|
icescreen
|
public |
ICEscreen detects and annotates ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements) in Bacillota genomes.
|
2025-02-18 |
|
gw
|
public |
View genomic sequencing data and vcf files
|
2025-02-18 |
|
ensembl-utils
|
public |
Ensembl Python general-purpose utils
|
2025-02-18 |
|
r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes.
|
2025-02-18 |
|
perl-error
|
public |
Error/exception handling in an OO-ish way
|
2025-02-18 |
|
hmftools-chord
|
public |
Predict HRD using somatic mutations contexts
|
2025-02-18 |
|
hmftools-sage
|
public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
|
2025-02-18 |
|
hmftools-purple
|
public |
PURPLE is a purity ploidy estimator for tumor samples.
|
2025-02-18 |
|
mutalyzer_hgvs_parser
|
public |
Mutalyzer HGVS variant description parser
|
2025-02-18 |
|
genin2
|
public |
Genin2 is a lightining-fast bioinformatic tool to predict genotypes for H5 viruses belonging to the European clade 2.3.4.4b
|
2025-02-17 |
|
souporcell
|
public |
Clustering scRNAseq by genotypes.
|
2025-02-17 |
|
skder
|
public |
skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes
|
2025-02-17 |
|
fastahack
|
public |
No Summary
|
2025-02-17 |
|
wgatools
|
public |
A Rust library and tools for whole genome alignment files.
|
2025-02-17 |
|
metafx
|
public |
MetaFX (METAgenomic Feature eXtraction) is a library for feature extraction from whole-genome metagenome sequencing data and classification of groups of samples.
|
2025-02-17 |
