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metanovo
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public |
Produce targeted databases for mass spectrometry analysis.
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2025-07-18 |
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ccp4srs
|
public |
CCP4 Storage, Retrieval and Search framework for small-molecule data
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2025-07-18 |
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pupmapper
|
public |
Tool & python package for calculating genome wide pileup mappability.
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2025-07-18 |
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r-erah
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public |
Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics.
|
2025-07-18 |
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vcf-validator
|
public |
EBI EVA - Validation tool for VCF file format compliance
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2025-07-18 |
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mosdepth
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public |
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.
|
2025-07-18 |
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bactopia-py
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public |
A Python package for working with Bactopia.
|
2025-07-17 |
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cenote-taker3
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public |
Cenote-Taker 3: Discover and annotate the virome.
|
2025-07-17 |
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bioconductor-lpsymphony
|
public |
Symphony integer linear programming solver in R
|
2025-07-17 |
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bioconductor-rbowtie2
|
public |
An R Wrapper for Bowtie2 and AdapterRemoval
|
2025-07-17 |
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minisplice
|
public |
minisplice is a command-line tool to estimate the odds-ratio score of canonical donor (GT) and acceptor (AG) splice sites. It is intended to be used with miniprot or minimap2 for improving alignment accuracy especially for distant homologs..
|
2025-07-17 |
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minigraph
|
public |
Proof-of-concept seq-to-graph mapper and graph generator
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2025-07-17 |
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cdskit
|
public |
A toolkit for processing protein-coding sequences (CDS).
|
2025-07-17 |
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isorefiner
|
public |
A refinement tool to identify exon-intron structures of transcript (RNA) isoforms using long reads
|
2025-07-17 |
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gcen
|
public |
GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation
|
2025-07-17 |
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dna-nn
|
public |
Model and predict short DNA sequence features with neural networks.
|
2025-07-17 |
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prodigal
|
public |
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
|
2025-07-17 |
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perl-experimental
|
public |
Experimental features made easy
|
2025-07-17 |
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phlame
|
public |
Novelty-aware intraspecies profiling of metagenome samples.
|
2025-07-17 |
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mumemto
|
public |
Finding maximal unique matches across pangenomes.
|
2025-07-16 |
|
transdecoder
|
public |
TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.
|
2025-07-16 |
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spatialleiden
|
public |
Implementation of multiplex Leiden for analysis of spatial omics data.
|
2025-07-16 |
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slclust
|
public |
A utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters.
|
2025-07-16 |
|
crossfilt
|
public |
Tools to filter reads causing alignment bias in cross-species genomic comparisons.
|
2025-07-16 |
|
seabreeze-genomics
|
public |
Analyzing Structural Variation Between Bacterial Genome Assemblies.
|
2025-07-16 |
