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hmftools-wisp
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public |
WISP performs tumor fraction estimate for longitudinal samples
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2025-07-24 |
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fpocketr
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public |
CLI tool to find, characterize, and visualize RNA-ligand binding pockets.
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2025-07-24 |
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gecko
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public |
A pairwise genome comparison software for the detection of High-scoring Segment Pairs
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2025-07-24 |
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gctb
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public |
GCTB (Genome-wide Complex Trait Bayesian ) is a software tool that comprises a family of Bayesian linear mixed models for complex trait analyses using genome-wide SNPs.
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2025-07-24 |
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minialign
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public |
Fast and accurate alignment tool for PacBio and Nanopore long reads.
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2025-07-24 |
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minia
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public |
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.
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2025-07-23 |
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hmftools-chord
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public |
Predict HRD using somatic mutations contexts
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2025-07-23 |
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pcdl
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public |
physicell data loader (pcdl) provides a platform independent, python3 based, pip installable interface to transform output, generated with the PhysiCell agent based modeling framework, into standard formats.
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2025-07-23 |
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ndex2
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public |
Nice CX Python includes a client and a data model.
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2025-07-23 |
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ervmancer
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public |
Quantifies HERV short read RNA sequencing expression data
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2025-07-23 |
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sylph-tax
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public |
Integrating taxonomic information into the sylph metagenome profiler.
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2025-07-23 |
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biocode
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public |
Bioinformatics code libraries and scripts.
|
2025-07-22 |
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rsidx
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public |
Library for indexing VCF files for random access searches by rsID.
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2025-07-22 |
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alen
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public |
Simple terminal sequence alignment viewer
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2025-07-22 |
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crocodeel
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public |
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
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2025-07-22 |
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agat
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public |
Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.
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2025-07-22 |
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gpsw
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public |
GPSW is a tool for analysing Global Protein Stability Profiling data.
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2025-07-22 |
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bigwig-nim
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public |
Command-line querying+conversion of bigwigs
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2025-07-22 |
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goalign
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public |
goalign is a set of command line tools to manipulate multiple alignments
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2025-07-22 |
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r-tidyheatmap
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public |
This is a tidy implementation for heatmap. At the moment it is based on the (great) package 'ComplexHeatmap'. The goal of this package is to interface a tidy data frame with this powerful tool. Some of the advantages are: Row and/or columns colour annotations are easy to integrate just specifying one parameter (column names). Custom grouping of rows is easy to specify providing a grouped tbl. For example: df %>% group_by(...). Labels size adjusted by row and column total number. Default use of Brewer and Viridis palettes.
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2025-07-22 |
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vcfbub
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public |
Popping bubbles in vg deconstruct VCFs
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2025-07-22 |
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parasail-python
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public |
Python bindings for the parasail C library containing implementations of pairwise sequence alignment algorithms.
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2025-07-22 |
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pantax
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public |
Strain-level metagenomic profiling using pangenome graphs with PanTax
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2025-07-22 |
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pilea
|
public |
Pilea: profiling bacterial growth dynamics from metagenomes with sketching
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2025-07-22 |
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svtopo
|
public |
Complex structural variant visualization for HiFi sequencing data: extraction tool
|
2025-07-22 |
