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r-amlmapr
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public |
R package for visualizing and analyzing AML transcriptome data
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2025-05-09 |
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r-ctree
|
public |
Clone trees for Cancer Evolution studies from bulk sequencing data.
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2025-05-08 |
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anchorwave
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public |
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication variation.
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2025-05-07 |
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integron_finder
|
public |
Integron Finder aims at detecting integrons in DNA sequences.
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2025-05-07 |
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smetana
|
public |
Species METabolic interaction ANAlysis (SMETANA) is a python-based command line tool to analyse microbial communities.
|
2025-05-07 |
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taxor
|
public |
Fast and space-efficient taxonomic classification of long reads.
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2025-05-07 |
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argo
|
public |
Argo: species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping
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2025-05-07 |
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mtbseq
|
public |
Pipeline for WGS analysis of M. tuberculosis
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2025-05-07 |
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perl-crypt-openssl-rsa
|
public |
RSA encoding and decoding, using the openSSL libraries
|
2025-05-07 |
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fast2q
|
public |
A Python3 program that counts sequence occurrences in FASTQ files.
|
2025-05-07 |
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treesapp
|
public |
TreeSAPP is a functional and taxonomic annotation tool for microbial genomes and proteins
|
2025-05-07 |
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bio
|
public |
Command-line utilities to make bioinformatics explorations more enjoyable.
|
2025-05-07 |
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gprofiler-official
|
public |
Functional enrichment analysis and more via the g:Profiler toolkit
|
2025-05-07 |
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bioconductor-metmashr
|
public |
Metabolite Mashing with R
|
2025-05-07 |
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flair
|
public |
Correction, isoform definition, and alternative splicing analysis of noisy reads (ONT and PacBio).
|
2025-05-07 |
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flye
|
public |
A fast and accurate de novo assembler for single molecule sequencing reads using repeat graphs.
|
2025-05-07 |
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gb-io
|
public |
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
|
2025-05-06 |
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phipack
|
public |
Simple, rapid, and statistically efficient test for recombination.
|
2025-05-06 |
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bwapy
|
public |
Bwapy provides python wrappers for bwa.
|
2025-05-06 |
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pixelator
|
public |
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
|
2025-05-05 |
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capcruncher
|
public |
An end-to-end solution for processing Capture-C, Tri-C and Tiled-C data.
|
2025-05-03 |
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regtools
|
public |
Tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context.
|
2025-05-03 |
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subread
|
public |
High-performance read alignment, quantification, and mutation discovery.
|
2025-05-03 |
|
oligon-design
|
public |
Simple and versatile approach to design specific oligonucleotides from large environmental datasets
|
2025-05-03 |
|
recur
|
public |
Detect recurrent amino-acid substitutions from multiple-sequence alignments.
|
2025-05-02 |
