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paragraph
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public |
Graph realignment tools for structural variants
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2023-06-16 |
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ncbi-amr
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public |
AMRFinder find acquired antimicrobial resistance genes in protein or nucleotide sequences.
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2023-06-16 |
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samplot
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public |
Plot structural variant signals from BAMs and CRAMs.
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2023-06-16 |
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stoatydive
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public |
StoatyDive is a tool to evaluate and classify predicted peak profiles to assess the binding specificity of a protein to its targets.
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2023-06-16 |
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triqler
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public |
A combined identification and quantification error model of label-free protein quantification
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2023-06-16 |
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hint
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public |
HiNT is a computational method for detecting copy number variations and translocations from Hi-C data
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2023-06-16 |
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circle-map
|
public |
Circular DNA analysis tools
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2023-06-16 |
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r-freerange
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public |
Generate and manipulate genomic ranges.
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2023-06-16 |
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scvis_galaxy
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public |
scvis is a python package for dimension reduction of high-dimensional biological data, especially single-cell RNA-sequencing (scRNA-seq) data.
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2023-06-16 |
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pal2nal
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public |
robust conversion of protein sequence alignments into the corresponding codon alignments
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2023-06-16 |
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seqan
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public |
SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.
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2023-06-16 |
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perl-devel-cover
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public |
Code coverage metrics for Perl
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2023-06-16 |
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entrezpy
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public |
Entrezpy is a dedicated Python library to interact with NCBI Entrez databases
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2023-06-16 |
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tapestry
|
public |
Validate and edit small eukaryotic genome assemblies
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2023-06-16 |
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perl-b-debug
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public |
print debug info about ops
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2023-06-16 |
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opencontactcli
|
public |
Static contact mapping algorithm to identify potential peptide biomimetics from protein interaction partner structure files.
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2023-06-16 |
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rsidx
|
public |
Library for indexing VCF files for random access searches by rsID
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2023-06-16 |
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perl-parallel-iterator
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public |
Simple parallel execution
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2023-06-16 |
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purple-bio
|
public |
Picking Unique Relevant Peptides for viraL Experiments
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2023-06-16 |
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pgcgap
|
public |
A prokaryotic genomics and comparative genomics analysis pipeline
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2023-06-16 |
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telescope
|
public |
Single locus resolution of Transposable ELEment expression.
|
2023-06-16 |
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colombo
|
public |
A software framework equipped with a GUI for the prediction of genomic islands (GIs) in prokaryotes.
|
2023-06-16 |
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trnanalysis
|
public |
tRNA analysis pipeline
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2023-06-16 |
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rnasamba
|
public |
A tool for computing the coding potential of RNA transcript sequences using deep learning.
|
2023-06-16 |
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r-popgenreport
|
public |
Provides beginner friendly framework to analyse population genetic data. Based on 'adegenet' objects it uses 'knitr' to create comprehensive reports on spatial genetic data. For detailed information how to use the package refer to the comprehensive tutorials or visit <http://www.popgenreport.org/>.
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2023-06-16 |
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r-mmod
|
public |
Provides functions for measuring population divergence from genotypic data.
|
2023-06-16 |
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perl-const-fast
|
public |
Facility for creating read-only scalars, arrays, and hashes
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2023-06-16 |
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perl-bignum
|
public |
Transparent BigNumber support for Perl
|
2023-06-16 |
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r-hierfstat
|
public |
Allows the estimation of hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in the hierarchy, following the algorithm of Yang (Evolution, 1998, 52(4):950-956; <DOI:10.2307/2411227>. Functions are also given to test via randomisations the significance of each F and variance components, using the likelihood-ratio statistics G.
|
2023-06-16 |
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perl-math-bigrat
|
public |
Arbitrary big rational numbers
|
2023-06-16 |
|
sv2
|
public |
Support Vector Structural Variation Genotyper
|
2023-06-16 |
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perl-text-levenshteinxs
|
public |
An XS implementation of the Levenshtein edit distance
|
2023-06-16 |
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mlpy
|
public |
mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and the GNU Scientific Libraries.
|
2023-06-16 |
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jvarkit-msa2vcf
|
public |
Writes a VCF from a multiple sequence alignment (MSA) in CLUSTAW or a FASTA format
|
2023-06-16 |
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bioconductor-mlm4omics
|
public |
To conduct Bayesian inference regression for responses with multilevel explanatory variables and missing values; It uses function from 'Stan', a software to implement posterior sampling using Hamiltonian MC and its variation Non-U-Turn algorithms. It implements the posterior sampling of regression coefficients from the multilevel regression models. The package has two main functions to handle not-missing-at-random missing responses and left-censored with not-missing-at random responses. The purpose is to provide a similar format as the other R regression functions but using 'Stan' models.
|
2023-06-16 |
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scelvis
|
public |
SCelVis - web-based visualization of single-cell data
|
2023-06-16 |
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clusterpicker
|
public |
The Cluster Picker identifies clusters in newick-formatted trees containing thousands of sequences within a few minutes.
|
2023-06-16 |
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bioconductor-explorase
|
public |
GUI for exploratory data analysis of systems biology data
|
2023-06-16 |
|
mhcnuggets
|
public |
MHCnuggets: Neoantigen peptide MHC binding prediction for class I and II
|
2023-06-16 |
|
happer
|
public |
Minimal Python library for generating haplotype sequences.
|
2023-06-16 |
|
ma
|
public |
MA - The Modular Aligner
|
2023-06-16 |
|
perl-cg-pipeline
|
public |
Perl libraries required for CG-Pipeline.
|
2023-06-16 |
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perl-lyve-set
|
public |
Perl libraries required for Lyve-SET.
|
2023-06-16 |
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kipoi-utils
|
public |
kipoi-utils: utils used in various packages related to kipoi
|
2023-06-16 |
|
kipoi-conda
|
public |
kipoi-conda: conda/pip related functionality used by Kipoi
|
2023-06-16 |
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sexdeterrmine
|
public |
A python script carry out calculate the relative coverage of X and Y chromosomes, and their associated error bars, out of capture data.
|
2023-06-16 |
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capc-map
|
public |
Analysis software for Capture-C data
|
2023-06-16 |
|
r-kaos
|
public |
Sequences encoding by using the chaos game representation. Löchel et al. (2019) <doi:10.1101/575324>.
|
2023-06-16 |
|
scvis
|
public |
scvis is a python package for dimension reduction of high-dimensional biological data, especially single-cell RNA-sequencing (scRNA-seq) data.
|
2023-06-16 |
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jvarkit-bam2wig
|
public |
Bam to fixedStep Wiggle converter, or BED GRAPH.
|
2023-06-16 |
