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pbptyper
|
public |
In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
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2024-08-06 |
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cite-seq-count
|
public |
A python package to map reads from CITE-seq or hashing data for single cell experiments.
|
2024-08-05 |
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bam-readcount
|
public |
bam-readcount generates metrics at single nucleotide positions.
|
2024-08-05 |
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snapgene-reader
|
public |
Convert Snapgene *.dna files dict/json/biopython.
|
2024-08-02 |
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pmultiqc
|
public |
Python package for quality control of proteomics datasets, based on multiqc package
|
2024-08-02 |
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genewalk
|
public |
Determine gene function based on network embeddings.
|
2024-08-02 |
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carveme
|
public |
CarveMe: automated genome-scale metabolic model reconstruction
|
2024-08-02 |
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reframed
|
public |
Metabolic modeling package.
|
2024-08-02 |
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ncbi-fcs-gx
|
public |
The NCBI Foreign Contamination Screen. Genomic cross-species aligner, for contamination detection.
|
2024-08-01 |
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neofox
|
public |
Annotation of mutated peptide sequences (mps) with published or novel potential neo-epitope descriptors
|
2024-08-01 |
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r-ichorcna
|
public |
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
|
2024-08-01 |
|
smof
|
public |
UNIX-style utilities for FASTA file exploration
|
2024-08-01 |
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perl-json
|
public |
JSON (JavaScript Object Notation) encoder/decoder
|
2024-07-31 |
|
snakeatac_env
|
public |
snakemake based ATACseq pipeline
|
2024-07-31 |
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espresso
|
public |
ESPRESSO (Error Statistics PRomoted Evaluator of Splice Site Options) processes long read RNA-seq data
|
2024-07-31 |
|
bigslice
|
public |
A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data.
|
2024-07-31 |
|
dbcan
|
public |
Standalone version of dbCAN annotation tool for automated CAZyme annotation
|
2024-07-31 |
|
codoff
|
public |
codoff: program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
|
2024-07-31 |
|
bio
|
public |
Command-line utilities to make bioinformatics explorations more enjoyable.
|
2024-07-30 |
|
subset-bam
|
public |
A tool to subset a 10x Genomics BAM file based on a tag, most commonly the cell barcode tag.
|
2024-07-30 |
|
cstag
|
public |
Python module to manipulate the minimap2's CS tag
|
2024-07-29 |
|
neodisambiguate
|
public |
Disambiguate reads that were mapped to multiple references.
|
2024-07-28 |
|
nda-tools
|
public |
Python package for interacting with NDA web services.
|
2024-07-26 |
|
deepmei
|
public |
A tool to detect mobile elements insertion
|
2024-07-26 |
|
lusstr
|
public |
Tool for converting NGS sequence data of forensic STR loci to various annotation styles
|
2024-07-25 |
|
pychopper
|
public |
A tool to identify, orient and rescue full length cDNA reads from nanopore data.
|
2024-07-25 |
|
sincei
|
public |
A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data.
|
2024-07-25 |
|
morpheus
|
public |
mass spectrometry–based proteomics database search algorithm
|
2024-07-25 |
|
rcx-tk
|
public |
This package adjusts and cleans the metadata file provided by a user.
|
2024-07-25 |
|
eskrim
|
public |
ESKRIM: EStimate with K-mers the RIchness in a Microbiome
|
2024-07-24 |
|
elastic-blast
|
public |
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective.
|
2024-07-24 |
|
arcas-hla
|
public |
high-resolution HLA typing from RNA seq
|
2024-07-24 |
|
ctxcore
|
public |
Core functions for pycisTarget and the SCENIC tool suite.
|
2024-07-24 |
|
seacells
|
public |
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data.
|
2024-07-23 |
|
entrez-direct
|
public |
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.
|
2024-07-23 |
|
obonet
|
public |
Parse OBO formatted ontologies into networkx
|
2024-07-22 |
|
chronumental
|
public |
Make time trees from large phylogenetic divergence trees
|
2024-07-22 |
|
r-epitrace
|
public |
Inference of cell age and phylogeny from single cell ATAC data.
|
2024-07-21 |
|
ymp
|
public |
Create entire NGS pipelines with one command
|
2024-07-19 |
|
pydna
|
public |
Representing double stranded DNA and functions for simulating cloning and homologous recombination between DNA molecules.
|
2024-07-19 |
|
gia
|
public |
Genomic Interval Arithmetic (gia)
|
2024-07-19 |
|
ggcaller
|
public |
A de Bruijn graph-based gene-caller and pangenome analysis tool
|
2024-07-19 |
|
scrubby
|
public |
Read depletion/extraction and database cleaning using k-mer and alignment methods
|
2024-07-19 |
|
tmhg
|
public |
tMHG-Finder is a tree-guided tool to partition whole genomes into maximal homologous groups.
|
2024-07-19 |
|
khipu-metabolomics
|
public |
Python library for generalized, low-level annotation of MS metabolomics
|
2024-07-19 |
|
r-ldweaver
|
public |
Perform genomewide epistasis analysis by evaluating the LD structure in bacteria.
|
2024-07-19 |
|
paragone
|
public |
Identify ortholog groups from a set of paralog sequences from multiple taxa.
|
2024-07-19 |
|
clermontyping
|
public |
determine the Clermont E coli phylotype
|
2024-07-18 |
|
isa-rwval
|
public |
ISA metadata tracking tools
|
2024-07-18 |
|
jupiterplot
|
public |
Circos Assembly Consistency (Jupiter) plot
|
2024-07-18 |
