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samestr
|
public |
SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
|
2024-08-30 |
|
ezomero
|
public |
A module with convenience functions for writing Python code that interacts with OMERO
|
2024-08-30 |
|
inspector
|
public |
Accurate long-read de novo assembly evaluation with Inspector
|
2024-08-30 |
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kegalign-full
|
public |
KegAlign: A Scalable GPU-Based Whole Genome Aligner
|
2024-08-29 |
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cnmf
|
public |
Consensus NMF for scRNA-Seq data.
|
2024-08-29 |
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anndata2ri
|
public |
Convert between AnnData and SingleCellExperiment
|
2024-08-29 |
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wisecondorx
|
public |
WIthin-SamplE COpy Number aberration DetectOR, including sex chromosomes
|
2024-08-29 |
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pango-collapse
|
public |
Collapse Pango sublineages up to user defined parent lineages.
|
2024-08-29 |
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sepp
|
public |
SATe-enabled phylogenetic placement
|
2024-08-29 |
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pygcap
|
public |
Python package for probe-based gene cluster finding in large microbial genome database.
|
2024-08-28 |
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maegatk
|
public |
Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
|
2024-08-27 |
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argnorm
|
public |
Normalize antibiotic resistance genes (ARGs) abundance tables (e.g., from metagenomics) by using the ARO ontology (developed by CARD).
|
2024-08-26 |
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metav
|
public |
Rapid detection and classification of viruses in metagenomics sequencing.
|
2024-08-26 |
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perl-parallel-forkmanager
|
public |
A simple parallel processing fork manager
|
2024-08-26 |
|
jclusterfunk
|
public |
A command line tool with a bunch of functions for trees
|
2024-08-26 |
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pasty
|
public |
A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
|
2024-08-26 |
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itolapi
|
public |
API for interacting with itol.embl.de
|
2024-08-26 |
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sccmec
|
public |
A tool for typing SCCmec cassettes in assemblies
|
2024-08-25 |
|
camlhmp
|
public |
Classification through yAML Heuristic Mapping Protocol
|
2024-08-25 |
|
pling
|
public |
Pling computes the rearrangement distance between plasmids and clusters on their basis
|
2024-08-24 |
|
gxformat2
|
public |
Galaxy Workflow Format 2 Descriptions
|
2024-08-23 |
|
bpipe
|
public |
Bpipe - a tool for running and managing bioinformatics pipelines
|
2024-08-23 |
|
mimsi
|
public |
A Deep Mulitple Instance Learning Classifier for Microsatellite Instability
|
2024-08-22 |
|
popoolation2
|
public |
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences.
|
2024-08-22 |
|
snakemake-executor-plugin-tes
|
public |
A Snakemake executor plugin for submitting jobs to a GA4GH TES cluster.
|
2024-08-22 |
|
pathogen-embed
|
public |
Create reduced dimension embeddings for pathogen sequences
|
2024-08-22 |
|
sigprofilerassignment
|
public |
SigProfilerAssignment - Assignment of known mutational signatures to individual samples and individual somatic mutations
|
2024-08-22 |
|
pyseer
|
public |
Sequence Element Enrichment Analysis (SEER), python implementation
|
2024-08-22 |
|
cami-opal
|
public |
OPAL assesses and compares the performance of taxonomic metagenome profilers.
|
2024-08-21 |
|
strdust
|
public |
Tandem repeat genotyper for long reads.
|
2024-08-21 |
|
mquad
|
public |
MQuad: Mixture Model for Mitochondrial Mutation detection in single-cell omics data.
|
2024-08-21 |
|
bbmix
|
public |
BBMix: inference of beta-binomial mixture model
|
2024-08-21 |
|
gmwi2
|
public |
Enhanced Health Status Prediction from Gut Microbiome Taxonomic Profiles
|
2024-08-21 |
|
vcfsim
|
public |
Script for generating simulated VCF's leveraging a coalescent simulating backend.
|
2024-08-21 |
|
ms2query
|
public |
Reliable and fast MS/MS spectral based analogue search
|
2024-08-20 |
|
cellsnp-lite
|
public |
Efficient genotyping bi-allelic SNPs on single cells
|
2024-08-20 |
|
cloci
|
public |
Co-occurrence Locus and Orthologous Cluster Identifier
|
2024-08-20 |
|
xclone
|
public |
Inference of clonal Copy Number Alterations in single cells.
|
2024-08-20 |
|
abritamr
|
public |
Running AMRFinderPlus for MDU
|
2024-08-20 |
|
snakemake-storage-plugin-fs
|
public |
A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync
|
2024-08-19 |
|
segalign-galaxy
|
public |
SegAlign: A Scalable GPU-Based Whole Genome Aligner
|
2024-08-19 |
|
segalign-full
|
public |
SegAlign: A Scalable GPU-Based Whole Genome Aligner
|
2024-08-19 |
|
plasnet
|
public |
Clustering, visualising and exploring plasmid networks
|
2024-08-19 |
|
snakemake-interface-storage-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its storage plugins.
|
2024-08-19 |
|
graphbin
|
public |
GraphBin: Refined binning of metagenomic contigs using assembly graphs
|
2024-08-19 |
|
alen
|
public |
Simple terminal sequence alignment viewer
|
2024-08-19 |
|
pipits
|
public |
PIPITS: An automated pipeline for analyses of fungal internal transcribed spacer (ITS) sequences from the Illumina sequencing platform
|
2024-08-19 |
|
dice
|
public |
Cell lineage reconstruction from single-cell CNA data
|
2024-08-17 |
|
nanocount
|
public |
Transcript abundance estimation from Nanopore *direct-RNA sequencing* datasets
|
2024-08-16 |
|
haplotaglr
|
public |
Haplotagging individual long reads using known haplotype information.
|
2024-08-16 |
