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nanocount

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Transcript abundance estimation from Nanopore *direct-RNA sequencing* datasets

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::nanocount

Usage Tracking

1.0.0.post6
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads

About

Summary

Transcript abundance estimation from Nanopore *direct-RNA sequencing* datasets

Last Updated

Aug 16, 2024 at 20:04

License

MIT

Total Downloads

738

Supported Platforms

noarch