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bioconductor-ygs98.db
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public |
Affymetrix Affymetrix YG_S98 Array annotation data (chip ygs98)
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2025-03-25 |
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bioconductor-yeast2probe
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public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Yeast\_2\_probe\_tab.
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2025-03-25 |
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bioconductor-yeast2cdf
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public |
A package containing an environment representing the Yeast_2.cdf file.
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2025-03-25 |
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bioconductor-yeast2.db
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public |
Affymetrix Affymetrix Yeast_2 Array annotation data (chip yeast2)
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2025-03-25 |
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bioconductor-yeast.db0
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public |
Base Level Annotation databases for yeast
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2025-03-25 |
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bioconductor-ye6100subdcdf
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public |
A package containing an environment representing the Ye6100subD.CDF file.
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2025-03-25 |
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bioconductor-ye6100subccdf
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public |
A package containing an environment representing the Ye6100subC.CDF file.
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2025-03-25 |
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bioconductor-ye6100subbcdf
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public |
A package containing an environment representing the Ye6100subB.CDF file.
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2025-03-25 |
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r-hardyweinberg
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public |
Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) <doi:10.1126/science.28.706.49> for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi: 10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
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2025-03-25 |
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bioconductor-ye6100subacdf
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public |
A package containing an environment representing the Ye6100subA.CDF file.
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2025-03-25 |
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bioconductor-xtropicalisprobe
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public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\_tropicalis\_probe\_tab.
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2025-03-25 |
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bioconductor-xtropicaliscdf
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public |
A package containing an environment representing the X_tropicalis.cdf file.
|
2025-03-25 |
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bioconductor-xlaevis2probe
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public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\_laevis\_2\_probe\_tab.
|
2025-03-25 |
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bioconductor-xlaevis2cdf
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public |
A package containing an environment representing the X_laevis_2.CDF file.
|
2025-03-25 |
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bioconductor-xlaevis.db
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public |
Affymetrix Xenopus laevis annotation data (chip xlaevis) assembled using data from public repositories
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2025-03-25 |
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bioconductor-xenopuslaevisprobe
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public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Xenopus\_laevis\_probe\_tab.
|
2025-03-25 |
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bioconductor-xenopuslaeviscdf
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public |
A package containing an environment representing the Xenopus_laevis.cdf file.
|
2025-03-25 |
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bioconductor-xenopus.db0
|
public |
Base Level Annotation databases for xenopus
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2025-03-25 |
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bioconductor-worm.db0
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public |
Base Level Annotation databases for worm
|
2025-03-25 |
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bioconductor-wheatprobe
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public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was wheat\_probe\_tab.
|
2025-03-25 |
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bioconductor-wheatcdf
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public |
A package containing an environment representing the wheat.cdf file.
|
2025-03-25 |
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bioconductor-vitisviniferaprobe
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public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Vitis\_Vinifera\_probe\_tab.
|
2025-03-25 |
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bioconductor-biocancer
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public |
Interactive Multi-Omics Cancers Data Visualization and Analysis
|
2025-03-25 |
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bioconductor-vitisviniferacdf
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public |
A package containing an environment representing the Vitis_Vinifera.cdf file.
|
2025-03-25 |
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bioconductor-varianttoolsdata
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public |
Data for the VariantTools tutorial
|
2025-03-25 |
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bioconductor-mtseekerdata
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public |
Supporting Data for the MTseeker Package
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2025-03-25 |
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bioconductor-mtseeker
|
public |
Bioconductor Tools for Human Mitochondrial Variant Analysis
|
2025-03-25 |
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bioconductor-htseqgenie
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public |
A NGS analysis pipeline.
|
2025-03-25 |
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bioconductor-sift.hsapiens.dbsnp137
|
public |
Database of PROVEAN/SIFT predictions for Homo sapiens dbSNP build 137
|
2025-03-25 |
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bioconductor-sift.hsapiens.dbsnp132
|
public |
Database of SIFT predictions for Homo sapiens dbSNP build 132
|
2025-03-25 |
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bioconductor-seqcat
|
public |
High Throughput Sequencing Cell Authentication Toolkit
|
2025-03-25 |
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bioconductor-scoreinvhap
|
public |
Get inversion status in predefined regions
|
2025-03-25 |
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bioconductor-polyphen.hsapiens.dbsnp131
|
public |
Database of PolyPhen predictions for Homo sapiens dbSNP build 131
|
2025-03-25 |
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bioconductor-ldblock
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public |
data structures for linkage disequilibrium measures in populations
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2025-03-25 |
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bioconductor-igvr
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public |
igvR: integrative genomics viewer
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2025-03-25 |
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bioconductor-icetea
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public |
Integrating Cap Enrichment with Transcript Expression Analysis
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2025-03-25 |
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bioconductor-inpas
|
public |
Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data
|
2025-03-25 |
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bioconductor-cicero
|
public |
Predict cis-co-accessibility from single-cell chromatin accessibility data
|
2025-03-25 |
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bioconductor-trena
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public |
Fit transcriptional regulatory networks using gene expression, priors, machine learning
|
2025-03-25 |
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bioconductor-ritan
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public |
Rapid Integration of Term Annotation and Network resources
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2025-03-25 |
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bioconductor-psichomics
|
public |
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
|
2025-03-25 |
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bioconductor-artms
|
public |
Analytical R tools for Mass Spectrometry
|
2025-03-25 |
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bioconductor-rexposome
|
public |
Exposome exploration and outcome data analysis
|
2025-03-25 |
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bioconductor-gwasurvivr
|
public |
gwasurvivr: an R package for genome wide survival analysis
|
2025-03-25 |
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bioconductor-scruff
|
public |
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
|
2025-03-25 |
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bioconductor-intansv
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public |
Integrative analysis of structural variations
|
2025-03-25 |
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bioconductor-geuvstore2
|
public |
demonstrate storage discipline for eQTL enumerations, revised
|
2025-03-25 |
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bioconductor-gqtlbase
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public |
gQTLBase: infrastructure for eQTL, mQTL and similar studies
|
2025-03-25 |
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bioconductor-cagefightr
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public |
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
|
2025-03-25 |
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bioconductor-listeretalbsseq
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public |
BS-seq data of H1 and IMR90 cell line excerpted from Lister et al. 2009
|
2025-03-25 |
