| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-ebseq | public | An R package for gene and isoform differential expression analysis of RNA-seq data | 2025-04-22 |
| r-sartools | public | Statistical Analysis of RNA-Seq data | 2025-04-22 |
| bioconductor-qdnaseq | public | Quantitative DNA Sequencing for Chromosomal Aberrations | 2025-04-22 |
| bioconductor-cghcall | public | Calling aberrations for array CGH tumor profiles. | 2025-04-22 |
| bioconductor-cghbase | public | CGHbase: Base functions and classes for arrayCGH data analysis. | 2025-04-22 |
| bioconductor-marray | public | Exploratory analysis for two-color spotted microarray data | 2025-04-22 |
| bioconductor-isomirs | public | Analyze isomiRs and miRNAs from small RNA-seq | 2025-04-22 |
| bioconductor-hpar | public | Human Protein Atlas in R | 2025-04-22 |
| bioconductor-pathview | public | a tool set for pathway based data integration and visualization | 2025-04-22 |
| bioconductor-kegggraph | public | KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor | 2025-04-22 |
| bioconductor-gage | public | Generally Applicable Gene-set Enrichment for Pathway Analysis | 2025-04-22 |
| bioconductor-gagedata | public | Auxillary data for gage package | 2025-04-22 |
| r-mutoss | public | Designed to ease the application and comparison of multiple hypothesis testing procedures for FWER, gFWER, FDR and FDX. Methods are standardized and usable by the accompanying 'mutossGUI'. | 2025-04-22 |
| bioconductor-minfi | public | Analyze Illumina Infinium DNA methylation arrays | 2025-04-22 |
| bioconductor-illuminaio | public | Parsing Illumina Microarray Output Files | 2025-04-22 |
| bioconductor-bumphunter | public | Bump Hunter | 2025-04-22 |
| bioconductor-siggenes | public | Multiple Testing using SAM and Efron's Empirical Bayes Approaches | 2025-04-22 |
| bioconductor-made4 | public | Multivariate analysis of microarray data using ADE4 | 2025-04-22 |
| bioconductor-ropls | public | PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data | 2025-04-22 |
| bioconductor-camera | public | Collection of annotation related methods for mass spectrometry data | 2025-04-22 |
| bioconductor-xcms | public | LC-MS and GC-MS Data Analysis | 2025-04-22 |
| bioconductor-mzr | public | parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data) | 2025-04-22 |
| bioconductor-protgenerics | public | Generic infrastructure for Bioconductor mass spectrometry packages | 2025-04-22 |
| bioconductor-mosaics | public | MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq) | 2025-04-22 |
| bioconductor-cexor | public | An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates | 2025-04-22 |
