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perl-math-bigint
|
public |
Arbitrary size floating point math package
|
2025-03-28 |
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planemo
|
public |
Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/).
|
2025-03-28 |
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arvados-python-client
|
public |
Python API for Arvados
|
2025-03-27 |
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perl-graph
|
public |
a Perl extension for keeping data partially sorted
|
2025-03-27 |
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bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2025-03-27 |
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snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-03-27 |
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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-03-27 |
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sistr_cmd
|
public |
Salmonella In Silico Typing Resource (SISTR) commandline tool for serovar prediction
|
2025-03-26 |
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snippy
|
public |
Rapid bacterial SNP calling and core genome alignments
|
2025-03-26 |
|
mofapy
|
public |
Multi-Omics Factor Analysis
|
2025-03-25 |
|
graphaligner
|
public |
Sequence to graph aligner for long reads
|
2025-03-25 |
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kwip
|
public |
kWIP implements a de novo, alignment free measure of sample genetic dissimilarity
|
2025-03-25 |
|
r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes.
|
2025-03-25 |
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r-cellassign
|
public |
Automated, probabilistic assignment of cell types in scRNA-seq data
|
2025-03-25 |
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r-pophelper
|
public |
A set of useful functions for processing admixture proportion files from the population structure analysis softwares STRUCTURE, TESS, ADMIXTURE, BAPS, fastSTRUCTURE etc. The package contains functions to read runs, tabulate runs, summarise runs, plot runs, estimate K using Evanno method, export clumpp files, export distruct files and generate barplots.
|
2025-03-25 |
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unifrac
|
public |
Fast phylogenetic diversity calculations
|
2025-03-25 |
|
readfq
|
public |
A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version
|
2025-03-25 |
|
consel
|
public |
CONSEL calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection
|
2025-03-25 |
|
picrust2
|
public |
PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States
|
2025-03-25 |
|
islandpath
|
public |
IslandPath-DIMOB is a standalone software to predict genomic islands in bacterial and archaeal genomes based on the presence of dinucleotide biases and mobility genes.
Genomic islands (GIs) are clusters of genes in prokaryotic genomes of probable horizontal origin. GIs are disproportionately associated with microbial adaptations of medical or environmental interest.
|
2025-03-25 |
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perl-moosex-singleton
|
public |
Turn your Moose class into a singleton
|
2025-03-25 |
|
gappa
|
public |
Genesis Applications for Phylogenetic Placement Analysis
|
2025-03-25 |
|
ir
|
public |
Program for Calculating the Repetitiveness of DNA Sequences
|
2025-03-25 |
|
digestiflow-demux
|
public |
Digestiflow Command Line Client.
|
2025-03-25 |
|
digestiflow-cli
|
public |
Command line client for Digestiflow.
|
2025-03-25 |
