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svtopovz
|
public |
Complex structural variant visualization for HiFi sequencing data: plotting tool.
|
2025-03-28 |
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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-03-28 |
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snippy
|
public |
Rapid bacterial SNP calling and core genome alignments
|
2025-03-26 |
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r-spacexr
|
public |
Cell type identification and cell type-specific differential expression in spatial transcriptomics
|
2025-03-25 |
|
hmftools-virus-interpreter
|
public |
Post-process VIRUSBreakend summary results.
|
2025-03-25 |
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gtotree
|
public |
GToTree is a user-friendly workflow for phylogenomics.
|
2025-03-25 |
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bioconductor-data-packages
|
public |
A package to enable downloading and installation of Bioconductor data packages
|
2025-03-25 |
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ngscheckmate
|
public |
Software package for identifying next generation sequencing (NGS) data files from the same individual.
|
2025-03-25 |
|
snakedeploy
|
public |
Helper for deploying published Snakemake pipelines.
|
2025-03-25 |
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dipcall
|
public |
Dipcall is a reference-based variant calling pipeline for a pair of phased haplotype assemblies.
|
2025-03-25 |
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libmaus2
|
public |
Collection of data structures and algorithms for NGS data.
|
2025-03-25 |
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gunc
|
public |
Python package for detection of chimerism and contamination in prokaryotic genomes.
|
2025-03-25 |
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raptor
|
public |
Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences
|
2025-03-25 |
|
nanocompore
|
public |
Nanocompore identifies raw signal changes between two conditions dRNA-Seq data.
|
2025-03-25 |
|
openduck
|
public |
Open source library for dynamic undocking (DUck)
|
2025-03-25 |
|
flair
|
public |
Correction, isoform definition, and alternative splicing analysis of noisy reads (ONT and PacBio).
|
2025-03-25 |
|
r-sceasy
|
public |
A package providing functions to convert between different single-cell data formats.
|
2025-03-25 |
|
altamisa
|
public |
Alternative Python API for accessing ISA-tab files.
|
2025-03-25 |
|
scanpy-scripts
|
public |
Scripts for using scanpy from the command line
|
2025-03-25 |
|
arb-bio-devel
|
public |
ARB 6 Sequence Analysis Suite
|
2025-03-25 |
|
arb-bio-tools
|
public |
ARB 6 Sequence Analysis Suite
|
2025-03-25 |
|
libarbdb
|
public |
ARB 6 Sequence Analysis Suite
|
2025-03-25 |
|
perl-math-random-mt-auto
|
public |
Auto-seeded Mersenne Twister PRNGs
|
2025-03-25 |
|
perl-unicode-utf8
|
public |
Encoding and decoding of UTF-8 encoding form
|
2025-03-25 |
|
pbmm2
|
public |
A minimap2 frontend for PacBio native data formats
|
2025-03-25 |
|
perl-package-stash-xs
|
public |
faster and more correct implementation of the Package::Stash API
|
2025-03-25 |
|
perl-list-moreutils-xs
|
public |
Provide the stuff missing in List::Util in XS
|
2025-03-25 |
|
perl-storable
|
public |
persistence for Perl data structures
|
2025-03-25 |
|
grid
|
public |
Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).
|
2025-03-25 |
|
logol
|
public |
Logol is a pattern matching grammar language and a set of tools to search a pattern in a sequence (nucleic or proteic)
|
2025-03-25 |
|
genomelake
|
public |
Simple and efficient random access to genomic data for deep learning models.
|
2025-03-25 |
|
r-biclust
|
public |
The main function biclust provides several algorithms to find biclusters in two-dimensional data: Cheng and Church, Spectral, Plaid Model, Xmotifs and Bimax. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.
|
2025-03-25 |
|
perl-class-xsaccessor
|
public |
Generate fast XS accessors without runtime compilation
|
2025-03-25 |
|
perl-mime-base64
|
public |
The RFC 2045 encodings; base64 and quoted-printable
|
2025-03-25 |
|
perl-indirect
|
public |
Lexically warn about using the indirect method call syntax.
|
2025-03-25 |
|
bioconductor-hdf5array
|
public |
HDF5 datasets as array-like objects in R
|
2025-03-25 |
|
bioconductor-rhdf5lib
|
public |
hdf5 library as an R package
|
2025-03-25 |
|
mentalist
|
public |
The MLST pipeline developed by the PathOGiST research group.
|
2025-03-25 |
|
bracken
|
public |
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
|
2025-03-25 |
|
pizzly
|
public |
Fast fusion detection using kallisto
|
2025-03-25 |
|
r-ggthemes
|
public |
Some extra themes, geoms, and scales for ggplot2. Provides ggplot2 themes and scales that replicate the look of plots by Edward Tufte, Stephen Few, Fivethirtyeight, The Economist, Stata, Excel, and The Wall Street Journal, among others. Provides geoms for Tufte s box plot and range frame.
|
2025-03-25 |
|
arb-bio
|
public |
ARB 6 Sequence Analysis Suite
|
2025-03-25 |
|
peakachu
|
public |
Peak calling tool for CLIP-seq data.
|
2025-03-25 |
|
bioconductor-genomeinfodbdata
|
public |
Species and taxonomy ID look up tables used by GenomeInfoDb
|
2025-03-25 |
|
gffcompare
|
public |
GffCompare by Geo Pertea
|
2025-03-25 |
|
perl-datetime
|
public |
A date and time object for Perl.
|
2025-03-25 |
|
perl-sub-attribute
|
public |
Reliable subroutine attribute handlers
|
2025-03-25 |
|
perl-variable-magic
|
public |
Associate user-defined magic to variables from Perl.
|
2025-03-25 |
|
trnascan-se
|
public |
tRNA detection in large-scale genomic sequences
|
2025-03-25 |
|
fastaindex
|
public |
No Summary
|
2025-03-25 |
