| Package Name | Access | Summary | Updated |
|---|---|---|---|
| sideretro | public | A pipeline for detecting Somatic Insertion of DE novo RETROcopies | 2025-05-19 |
| bamtools | public | C++ API & command-line toolkit for working with BAM data. | 2025-05-18 |
| tissuumaps | public | TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images | 2025-05-18 |
| soi | public | Orthology Index (OrthoIndex or OI) determines the orthology of a syntenic block. | 2025-05-18 |
| vvv2_display | public | Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr]. | 2025-05-17 |
| sipros | public | Tools for stable isotopic mass spectrometry-based metaproteomics | 2025-05-17 |
| libcarna-python | public | Real-time 3D visualization of biomedical data and beyond in Python | 2025-05-17 |
| lollipop | public | A tool for Deconvolution for Wastewater Genomics | 2025-05-16 |
| strobealign | public | Align short reads using dynamic seed size with strobemers | 2025-05-16 |
| juicebox_scripts | public | A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats | 2025-05-16 |
| omark | public | OMArk - Proteome quality assesment based on OMAmer placements | 2025-05-16 |
| omamer | public | OMAmer - tree-driven and alignment-free protein assignment to sub-families | 2025-05-16 |
| multiz | public | DNA multiple sequence aligner from Penn State's Miller lab. | 2025-05-16 |
| snakemake-storage-plugin-fs | public | A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync. | 2025-05-15 |
| perl-vcftools-vcf | public | cpanm ready distribution of VCFtools Perl libraries | 2025-05-15 |
| vcftools | public | A set of tools written in Perl and C++ for working with VCF files. | 2025-05-15 |
| tajimas_d | public | Computes Tajimas D, the Pi- or Watterson-Estimator for multiple sequences. | 2025-05-14 |
| lovis4u | public | Loci Visualisation Tool. | 2025-05-14 |
| r-ldweaver | public | Perform genomewide epistasis analysis by evaluating the LD structure in bacteria. | 2025-05-14 |
| dmox | public | Rust-based demultiplexing of haplotagging linked-read data. | 2025-05-14 |
| genotypy | public | Automatically detect genomic barcodes integrated into loci of interest from sequencing data | 2025-05-14 |
| quantms-utils | public | Python package with scripts and helpers for the quantms workflow. | 2025-05-14 |
| pypints | public | Peak Identifier for Nascent Transcripts Starts (PINTS) | 2025-05-14 |
| sdrf-pipelines | public | Translate, convert SDRF to configuration pipelines | 2025-05-14 |
| seq2science | public | Automated preprocessing of Next-Generation-Sequencing data. | 2025-05-14 |
