| Package Name | Access | Summary | Updated |
|---|---|---|---|
| palantir | public | Palantir for modeling continuous cell state and cell fate choices in single cell data | 2025-05-22 |
| ucsc-cell-browser | public | A browser for single-cell data, main site at http://cells.ucsc.edu. UCSC Cellbrowser, an interactive browser for single cell data. Includes importers and basic pipelines for text files, Seurat, Scanpy and Cellranger. All Javascript - does not require a server backend. | 2025-05-22 |
| biobb_structure_checking | public | BioBB_structure_checking performs MDWeb structure checking set as a command line utility. | 2025-05-22 |
| pisad | public | pisad - Phsaed Intraspecies Sample Anomalies Detection tool | 2025-05-22 |
| repaq | public | A fast lossless FASTQ compressor with ultra-high compression ratio. | 2025-05-22 |
| genomic_address_service | public | Genomic Address Service: De novo clustering and cluster address assignment | 2025-05-22 |
| pigpen | public | A package to quantify RNA localization using OINC-seq data. | 2025-05-21 |
| triqler | public | A combined identification and quantification error model of label-free protein quantification. | 2025-05-21 |
| immuneml | public | immuneML is a software platform for machine learning analysis of immune receptor repertoires. | 2025-05-21 |
| smithwaterman | public | Smith-waterman-gotoh alignment algorithm. | 2025-05-21 |
| treeswirl | public | TreeSwirl: A tool to infer locus-specific population mixtures from linked genome-wide allele frequencies. | 2025-05-21 |
| juicertools | public | Visualization and analysis software for Hi-C data | 2025-05-21 |
| radte | public | Reconciliation-Assisted Divergence Time Estimation for gene families. | 2025-05-21 |
| distle | public | Fast distance matrix calculations on fasta and cgmlst files | 2025-05-21 |
| msmetaenhancer | public | MSMetaEnhancer is a Python tool that adds more annotations (e.g. SMILES, InChI, CAS number) to MSP files. | 2025-05-21 |
| abnumber | public | AbNumber - Antibody numbering using ANARCI | 2025-05-21 |
| rbpbench | public | Evaluate CLIP-seq and other genomic region data using a comprehensive collection of known RBP binding motifs | 2025-05-21 |
| hmftools-cider | public | Determine a comprehensive list of CDR3 sequences for each of the IG and TCR loci from RNA and DNA sequence data. | 2025-05-21 |
| unicore | public | Universal and efficient core gene phylogeny with Foldseek and ProstT5 | 2025-05-20 |
| longbow | public | A Python program for nanopore sequencing basecalling configuration prediction | 2025-05-20 |
| meme | public | Motif-based sequence analysis tools. | 2025-05-20 |
| ena-upload-cli | public | Command Line Interface to upload data to the European Nucleotide Archive | 2025-05-19 |
| vcflib | public | Command-line tools for manipulating VCF files. | 2025-05-19 |
| sideretro | public | A pipeline for detecting Somatic Insertion of DE novo RETROcopies | 2025-05-19 |
| bamtools | public | C++ API & command-line toolkit for working with BAM data. | 2025-05-18 |
