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Package Name Access Summary Updated
bioconductor-hugene21sttranscriptcluster.db public Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster) 2024-12-26
bioconductor-hu6800.db public Affymetrix Affymetrix Hu6800 Array annotation data (chip hu6800) 2024-12-26
bioconductor-rnamodr.ml public Detecting patterns of post-transcriptional modifications using machine learning 2024-12-26
bioconductor-lapointe.db public A package containing metadata for LAPOINTE arrays assembled using data from public repositories 2024-12-26
bioconductor-rnamodr.ribomethseq public Detection of 2'-O methylations by RiboMethSeq 2024-12-26
bioconductor-hthgu133b.db public Affymetrix Affymetrix HT_HG-U133B Array annotation data (chip hthgu133b) 2024-12-26
bioconductor-rnamodr.alkanilineseq public Detection of m7G, m3C and D modification by AlkAnilineSeq 2024-12-26
bioconductor-hgug4101a.db public Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a) assembled using data from public repositories 2024-12-26
bioconductor-lumihumanall.db public Illumina Human Illumina expression annotation data (chip lumiHumanAll) assembled using data from public repositories 2024-12-26
bioconductor-epivizrdata public Data Management API for epiviz interactive visualization app 2024-12-26
bioconductor-illuminahumanv4.db public Illumina HumanHT12v4 annotation data (chip illuminaHumanv4) assembled using data from public repositories 2024-12-26
bioconductor-nugohs1a520180.db public Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180) assembled using data from public repositories 2024-12-26
bioconductor-compepitools public Tools for computational epigenomics 2024-12-26
bioconductor-hgfocus.db public Affymetrix Affymetrix HG-Focus Array annotation data (chip hgfocus) 2024-12-26
bioconductor-listeretalbsseq public BS-seq data of H1 and IMR90 cell line excerpted from Lister et al. 2009 2024-12-26
bioconductor-hgu133a2.db public Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2) 2024-12-26
bioconductor-extrachips public Additional functions for working with ChIP-Seq data 2024-12-26
bioconductor-clariomdhumanprobeset.db public Affymetrix clariomdhuman annotation data (chip clariomdhumanprobeset) 2024-12-26
bioconductor-hguatlas13k.db public Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k) assembled using data from public repositories 2024-12-26
bioconductor-hu35ksubc.db public Affymetrix Affymetrix Hu35KsubC Array annotation data (chip hu35ksubc) 2024-12-26
bioconductor-clariomdhumantranscriptcluster.db public Affymetrix clariomdhuman annotation data (chip clariomdhumantranscriptcluster) 2024-12-26
bioconductor-cocoa public Coordinate Covariation Analysis 2024-12-26
bioconductor-hgu95e.db public Affymetrix Affymetrix HG U95E Array annotation data (chip hgu95e) 2024-12-26
bioconductor-hta20transcriptcluster.db public Affymetrix hta20 annotation data (chip hta20transcriptcluster) 2024-12-26
bioconductor-methylsig public MethylSig: Differential Methylation Testing for WGBS and RRBS Data 2024-12-26
bioconductor-hgu95a.db public Affymetrix Affymetrix HG U95A Array annotation data (chip hgu95a) 2024-12-26
bioconductor-borealis public Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution 2024-12-26
bioconductor-hgu95av2.db public Affymetrix Affymetrix HG U95Av2 Array annotation data (chip hgu95av2) 2024-12-26
r-acidexperiment public Toolkit to extend the functionality of SummarizedExperiment. 2024-12-26
bioconductor-hgudkfz31.db public Unknown annotation data (chip hguDKFZ31) assembled using data from public repositories 2024-12-26
bioconductor-vtpnet public variant-transcription factor-phenotype networks 2024-12-26
bioconductor-norway981.db public Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981) assembled using data from public repositories 2024-12-26
bioconductor-illuminahumanv2.db public Illumina HumanWG6v2 annotation data (chip illuminaHumanv2) assembled using data from public repositories 2024-12-26
bioconductor-huo22.db public FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22) assembled using data from public repositories 2024-12-26
bioconductor-hugene11stprobeset.db public Affymetrix hugene11 annotation data (chip hugene11stprobeset) 2024-12-26
r-panther public PANTHER database annotations. 2024-12-26
bioconductor-hs6ug171.db public A package containing metadata for Hs6UG171 arrays assembled using data from public repositories 2024-12-26
bioconductor-hugene20sttranscriptcluster.db public Affymetrix hugene20 annotation data (chip hugene20sttranscriptcluster) 2024-12-26
bioconductor-variantfiltering public Filtering of coding and non-coding genetic variants 2024-12-26
bioconductor-illuminahumanwgdaslv4.db public Illumina HumanWGDASLv4 annotation data (chip illuminaHumanWGDASLv4) assembled using data from public repositories 2024-12-26
bioconductor-phastcons100way.ucsc.hg19 public Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species. 2024-12-26
bioconductor-subcellbarcode public SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome 2024-12-26
bioconductor-hugene10sttranscriptcluster.db public Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster) 2024-12-26
bioconductor-phastcons100way.ucsc.hg38 public Store UCSC phastCons conservation scores for the human genome (hg38) calculated from multiple alignments with other 99 vertebrate species. 2024-12-26
r-jetset public On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping. 2024-12-26
bioconductor-orfik public Open Reading Frames in Genomics 2024-12-26
bioconductor-hugene11sttranscriptcluster.db public Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster) 2024-12-26
bioconductor-hsagilentdesign026652.db public Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652) assembled using data from public repositories 2024-12-26
bioconductor-hs25kresogen.db public RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen) assembled using data from public repositories 2024-12-26
bioconductor-diffutr public diffUTR: Streamlining differential exon and 3' UTR usage 2024-12-26
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