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regional
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public |
simple manipulation and display of spatial regions in python
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2023-06-16 |
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perl-string-truncate
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public |
a module for when strings are too long to be displayed in...
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2023-06-16 |
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focus
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public |
FOCUS is an innovative and agile model to profile and report organisms present in metagenomic samples based on composition usage without sequence length dependencies.
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2023-06-16 |
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perl-sub-exporter-formethods
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public |
helper routines for using Sub::Exporter to build methods
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2023-06-16 |
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perl-mac-propertylist
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public |
work with Mac plists at a low level
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2023-06-16 |
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perl-business-isbn-data
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public |
data pack for Business::ISBN
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2023-06-16 |
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fithic
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public |
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome architecture assays.
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2023-06-16 |
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perl-object-insideout
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public |
Comprehensive inside-out object support module
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2023-06-16 |
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perl-math-complex
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public |
trigonometric functions
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2023-06-16 |
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perl-test-sys-info
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public |
Centralized test suite for Sys::Info.
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2023-06-16 |
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perl-string-rewriteprefix
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public |
rewrite strings based on a set of known prefixes
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2023-06-16 |
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perl-heap
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public |
Perl extensions for keeping data partially sorted
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2023-06-16 |
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perl-xml-entities
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public |
Mapping of XML entities to Unicode
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2023-06-16 |
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perl-module-list
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public |
module `directory' listing
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2023-06-16 |
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r-raceid
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public |
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the StemID2 algorithm.
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2023-06-16 |
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perl-moosex-types-stringlike
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public |
Moose type constraints for strings or string-like objects
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2023-06-16 |
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r-fateid
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public |
Application of 'FateID' allows computation and visualization of cell fate bias for multi-lineage single cell transcriptome data. Herman, J.S., Sagar, Grün D. (2017) <DOI:10.1038/nmeth.4662>.
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2023-06-16 |
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perl-slurp
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public |
Slurp entire files into variables
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2023-06-16 |
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perl-data-munge
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public |
various utility functions
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2023-06-16 |
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perl-module-pluggable
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public |
automatically give your module the ability to have plugins
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2023-06-16 |
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perl-file-copy-recursive-reduced
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public |
Recursive copying of files and directories within Perl 5 toolchain
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2023-06-16 |
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perl-sub-info
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public |
Tool for inspecting subroutines.
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2023-06-16 |
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perl-moosex-role-parameterized
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public |
Moose roles with composition parameters
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2023-06-16 |
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perl-test-exec
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public |
Test that some code calls exec without terminating testing
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2023-06-16 |
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r-fastqcr
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public |
'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.
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2023-06-16 |
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perl-return-multilevel
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public |
return across multiple call levels
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2023-06-16 |
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perl-import-into
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public |
Import packages into other packages
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2023-06-16 |
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perl-module-util
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public |
Module name tools and transformations
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2023-06-16 |
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perl-env
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public |
perl module that imports environment variables as scalars or arrays
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2023-06-16 |
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r-seurat
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public |
A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
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2023-06-16 |
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perl-getopt-long-descriptive
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public |
Getopt::Long, but simpler and more powerful
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2023-06-16 |
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perl-file-pushd
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public |
change directory temporarily for a limited scope
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2023-06-16 |
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super-focus
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public |
SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data
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2023-06-16 |
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perl-test-cleannamespaces
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public |
Check for uncleaned imports
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2023-06-16 |
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plasflow
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public |
PlasFlow - predicting plasmid sequences in metagenomic data
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2023-06-16 |
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minorseq
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public |
Minor Variant Calling and Phasing Tools
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2023-06-16 |
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perl-module-runtime-conflicts
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public |
Provide information on conflicts for Module::Runtime
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2023-06-16 |
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chado-tools
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public |
Tools to access CHADO databases
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2023-06-16 |
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gffmunger
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public |
Munges GFF3 files exported from Chado database to make them suitable for loading into WebApollo
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2023-06-16 |
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methylextract
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public |
High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data
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2023-06-16 |
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perl-test-needs
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public |
Skip tests when modules not available
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2023-06-16 |
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perl-mro-compat
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public |
mro::* interface compatibility for Perls < 5.9.5
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2023-06-16 |
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perl-package-deprecationmanager
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public |
Manage deprecation warnings for your distribution
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2023-06-16 |
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perl-compress-bgzf
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public |
Read/write blocked GZIP (BGZF) files
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2023-06-16 |
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ditasic
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public |
DiTASiC is designed as a comprehensive approach for abundance estimation and differential abundance assessment of individual taxa in metagenomics samples.
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2023-06-16 |
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banner
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public |
BANNER is a tool that lives inside HULK and aims to make sense of hulk histosketches.
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2023-06-16 |
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python-consensuscore2
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public |
PacBio Arrow Consensus library for Sequel data
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2023-06-16 |
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cnvetti
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public |
CNVetti is a CNV caller from HTS data.
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2023-06-16 |
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tagger
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public |
tagger allows you to tag a corpus of documents with search terms that you provide. It is often used to find mentions of proteins, species, diseases, tissues, chemicals and drugs, GO terms, and so forth, in articles in the Medline corpus.
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2023-06-16 |
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perl-bio-tools-phylo-paml
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public |
Parses output from the PAML programs codeml, baseml, basemlg, codemlsites and yn00
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2023-06-16 |
