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perl-test-script
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public |
Basic cross-platform tests for scripts
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2023-06-16 |
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bioconductor-powerexplorer
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public |
Power Estimation Tool for RNA-Seq and proteomics data
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2023-06-16 |
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r-mess
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public |
A mixed collection of useful and semi-useful diverse statistical functions, some of which may even be referenced in The R Primer book.
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2023-06-16 |
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bioconductor-mulder2012
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public |
Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens
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2023-06-16 |
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perl-bio-rna-rnaalisplit
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public |
Split and deconvolute structural RNA multiple sequence alignments
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2023-06-16 |
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bioconductor-htsanalyzer
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public |
Gene set over-representation, enrichment and network analyses for high-throughput screens
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2023-06-16 |
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bioconductor-maqcsubsetafx
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public |
MAQC data subset for the Affymetrix platform
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2023-06-16 |
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r-rismed
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public |
A set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed.
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2023-06-16 |
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bioconductor-dualks
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public |
Dual KS Discriminant Analysis and Classification
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2023-06-16 |
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nullarbor
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public |
Reads to report pipeline for bacterial isolate NGS data
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2023-06-16 |
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bioconductor-allenpvc
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public |
GEO accession data GSE71585 as a SingleCellExperiment
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2023-06-16 |
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bioconductor-scisi
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public |
In Silico Interactome
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2023-06-16 |
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bioconductor-gcmap
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public |
Tools for Connectivity Map-like analyses
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2023-06-16 |
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bioconductor-imetagene
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public |
A graphical interface for the metagene package
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2023-06-16 |
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bioconductor-arraytv
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public |
Implementation of wave correction for arrays
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2023-06-16 |
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bioconductor-missmethyl
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public |
Analysing Illumina HumanMethylation BeadChip Data
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2023-06-16 |
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bioconductor-timeseriesexperiment
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public |
Analysis for short time-series data
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2023-06-16 |
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bioconductor-cve
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public |
Cancer Variant Explorer
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2023-06-16 |
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bioconductor-anamir
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public |
An integrated analysis package of miRNA and mRNA expression data
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2023-06-16 |
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bioconductor-slgi
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public |
Synthetic Lethal Genetic Interaction
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2023-06-16 |
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bioconductor-expressionview
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public |
Visualize biclusters identified in gene expression data
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2023-06-16 |
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bioconductor-migsa
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public |
Massive and Integrative Gene Set Analysis
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2023-06-16 |
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bioconductor-pathwaysplice
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public |
An R Package for Unbiased Splicing Pathway Analysis
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2023-06-16 |
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bioconductor-gcmapweb
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public |
A web interface for gene-set enrichment analyses
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2023-06-16 |
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bioconductor-impulsede2
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public |
Differential expression analysis of longitudinal count data sets
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2023-06-16 |
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r-imp4p
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public |
Functions to analyse missing value mechanisms and to impute data sets in the context of bottom-up MS-based proteomics.
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2023-06-16 |
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bioconductor-methylgsa
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public |
Gene Set Analysis Using the Outcome of Differential Methylation
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2023-06-16 |
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bioconductor-pcpheno
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public |
Phenotypes and cellular organizational units
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2023-06-16 |
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bioconductor-ppistats
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public |
Protein-Protein Interaction Statistical Package
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2023-06-16 |
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bioconductor-eisa
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public |
Expression data analysis via the Iterative Signature Algorithm
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2023-06-16 |
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bioconductor-tcgabiolinksgui
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public |
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"
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2023-06-16 |
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bioconductor-meal
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public |
Perform methylation analysis
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2023-06-16 |
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bioconductor-genogam
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public |
A GAM based framework for analysis of ChIP-Seq data
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2023-06-16 |
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bioconductor-dbchip
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public |
Differential Binding of Transcription Factor with ChIP-seq
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2023-06-16 |
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bioconductor-celltree
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public |
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
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2023-06-16 |
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meta-sparse
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public |
SPARSE indexes reference genomes in public databases into hierarchical clusters and uses it to predict origins of metagenomic reads.
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2023-06-16 |
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bioconductor-mesh.syn.eg.db
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public |
Mapping table for Cyanobacteria Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.osa.eg.db
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public |
Mapping table for Oryza sativa Japonica Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.dsi.eg.db
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public |
Mapping table for Drosophila simulans Gene ID to MeSH
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2023-06-16 |
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bioconductor-ggbase
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public |
GGBase infrastructure for genetics of gene expression package GGtools
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2023-06-16 |
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r-hardyweinberg
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public |
Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) <doi:10.1126/science.28.706.49> for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi: 10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
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2023-06-16 |
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bioconductor-org.pf.plasmo.db
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public |
Genome wide annotation for Malaria
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2023-06-16 |
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bioconductor-mesh.rno.eg.db
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public |
Mapping table for Rattus norvegicus Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.pto.eg.db
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public |
Mapping table for Pan troglodytes Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.pfa.3d7.eg.db
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public |
Mapping table for Plasmodium falciparum 3D7 Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.mtr.eg.db
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public |
Mapping table for Medicago truncatula Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.gma.eg.db
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public |
Mapping table for Glycine max Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.eqc.eg.db
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public |
Mapping table for Equus caballus Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.dme.eg.db
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public |
Mapping table for Drosophila melanogaster Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.cja.eg.db
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public |
Mapping table for Callithrix jacchus Gene ID to MeSH
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2023-06-16 |
