|
tagore
|
public |
A simple way to visualize features on human chromosome ideograms
|
2023-06-16 |
|
umap
|
public |
Umap and Bismap: tools for genome and methylome mappability
|
2023-06-16 |
|
salmid
|
public |
Rapid tool to check taxonomic ID of single isolate samples. Currently only IDs Salmonella species and subspecies, and some common contaminants (Listeria, Escherichia).
|
2023-06-16 |
|
python-eel
|
public |
Tool for finding evolutionarily conserved mammalian enhancer elements.
|
2023-06-16 |
|
xpressplot
|
public |
A toolkit for navigating and analyzing gene expression datasets.
|
2023-06-16 |
|
panpasco
|
public |
Pipeline for pangenome mapping and pairwise SNP distance
|
2023-06-16 |
|
fings
|
public |
Filters for Next Generation Sequencing
|
2023-06-16 |
|
blksheep
|
public |
A package for differential extreme values analysis
|
2023-06-16 |
|
traitar
|
public |
traitar - The microbial trait analyzer
|
2023-06-16 |
|
kggseq
|
public |
KGGSeq is a software platform constituted of Bioinformatics and statistical genetics functions making use of valuable biologic resources and knowledge for sequencing-based genetic mapping of variants/genes responsible for human diseases/traits.
|
2023-06-16 |
|
atlas-metadata-validator
|
public |
A MAGE-TAB validator for Expression Atlas and Single Cell Expression Atlas
|
2023-06-16 |
|
sepp-refgg138
|
public |
SATe-enabled phylogenetic placement
|
2023-06-16 |
|
rop
|
public |
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
|
2023-06-16 |
|
sepp-refsilva128
|
public |
SATe-enabled phylogenetic placement
|
2023-06-16 |
|
svanalyzer
|
public |
SVanalyzer: tools for the analysis of structural variation in genomes
|
2023-06-16 |
|
ena-dl
|
public |
A tool to download FASTQs associated with Study, Experiment, or Run accessions.
|
2023-06-16 |
|
calib
|
public |
Clustering without alignment using (locality sensitive hashing) LSH and MinHashing of barcoded reads
|
2023-06-16 |
|
jmztab-m
|
public |
This project is the reference reader, writer and validator implementation for mzTab for metabolomics 2.0+.
|
2023-06-16 |
|
emmtyper
|
public |
Streptococcus pyogenes in silico EMM typer
|
2023-06-16 |
|
monocle3-cli
|
public |
A set of wrappers for individual components of the monocle3 package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently monocle3 R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
|
2023-06-16 |
|
aquila
|
public |
Diploid personal genome assembly and comprehensive variant detection based on linked-reads
|
2023-06-16 |
|
jupyterngsplugin
|
public |
Jupyter notebook plugin Bioinformatics NGS data analysis
|
2023-06-16 |
|
extract_fasta_seq
|
public |
To extract specific fasta sequences from a fasta file.
|
2023-06-16 |
|
msaconverter
|
public |
To convert multiple alignment alignments (MSA) into different formats
|
2023-06-16 |
|
python-goenrichment
|
public |
GO enrichment analysis from a list of gene names using a precomputed database
|
2023-06-16 |
|
taxonomy_ranks
|
public |
To get taxonomy ranks information for taxid, species name, or higher ranks (e.g., genus, family) with ETE3 from NCBI Taxonomy database.
|
2023-06-16 |
|
bold-identification
|
public |
A tool for taxonomic assignment for given sequences using the BOLD database (http://www.boldsystems.org/index.php)
|
2023-06-16 |
|
extract-codon-alignment
|
public |
To extract some codon positions (1st, 2nd, 3rd) from a CDS alignment.
|
2023-06-16 |
|
ega2
|
public |
EGA download client v2
|
2023-06-16 |
|
logomaker
|
public |
Package for making Sequence Logos
|
2023-06-16 |
|
aquila_umap
|
public |
This is a program to generate Umap for Aquila diploid assembly.
|
2023-06-16 |
|
motifraptor
|
public |
Motif-centric analysis on GWAS data
|
2023-06-16 |
|
pynnotator
|
public |
A Python Annotation Framework for VCFs using multiple tools.
|
2023-06-16 |
|
uvp
|
public |
A Unified Variant Pipeline to identify variants and assign lineage from MTBC sequence data.
|
2023-06-16 |
|
kounta
|
public |
Generate multi-sample k-mer count matrix
|
2023-06-16 |
|
aquila_stlfr
|
public |
Diploid assembly and variants calling for stLFR and hybrid assembler for both linked-reads.
|
2023-06-16 |
|
vmatch
|
public |
The Vmatch large scale sequence analysis software
|
2023-06-16 |
|
bioconductor-easyqpcr
|
public |
EasyqpcR for low-throughput real-time quantitative PCR data analysis
|
2023-06-16 |
|
bioconductor-conumee
|
public |
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
|
2023-06-16 |
|
phylocsf
|
public |
Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
|
2023-06-16 |
|
legsta
|
public |
In silico Legionella pneumophila Sequence Based Typing
|
2023-06-16 |
|
jasmine
|
public |
Jasmine: a Java pipeline for isomiR characterization in miRNA-Seq Data
|
2023-06-16 |
|
biopython.convert
|
public |
Interconvert various file formats supported by BioPython
|
2023-06-16 |
|
scrublet
|
public |
Doublet prediction in single-cell RNA-sequencing data
|
2023-06-16 |
|
python-htsget
|
public |
Python API and command line interface for the GA4GH htsget API.
|
2023-06-16 |
|
bioconductor-mafdb.gnomad.r2.1.grch38
|
public |
Minor allele frequency data from gnomAD release 2.1 for GRCh38
|
2023-06-16 |
|
feature_merge
|
public |
Merge features in GFF files
|
2023-06-16 |
|
blacksheep-outliers
|
public |
A package for differential extreme values analysis
|
2023-06-16 |
|
bioconductor-epihet
|
public |
Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data
|
2023-06-16 |
|
bioconductor-mcagui
|
public |
Microbial Community Analysis GUI
|
2023-06-16 |
