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cutqc
|
public |
generate aggregated fastqc report of both before and after trimming.
|
2023-06-16 |
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corsid
|
public |
Core Sequence Identifier
|
2023-06-16 |
|
sequana_pipetools
|
public |
A set of tools to help building or using Sequana pipelines
|
2023-06-16 |
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genview
|
public |
Gene-centric visualization tool for genomic sequences
|
2023-06-16 |
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biobb_remote
|
public |
Biobb_remote is the Biobb module for remote execution via ssl.
|
2023-06-16 |
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mhg
|
public |
MHG is an annotation-free graph-based tool to merge and partition homologous groups.
|
2023-06-16 |
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turbocor
|
public |
A command line tool to compute very large correlation matrices.
|
2023-06-16 |
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perl-xxx
|
public |
See Your Data in the Nude
|
2023-06-16 |
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perl-moosex-strictconstructor
|
public |
Make your object constructors blow up on unknown attributes
|
2023-06-16 |
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perl-io-pager
|
public |
Select a pager (possibly perl-based) & pipe it text if a TTY
|
2023-06-16 |
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proksee
|
public |
Proksee is a suite of command line tools for performing assembly, annotation and visualization of microbial genomes.
|
2023-06-16 |
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how_are_we_stranded_here
|
public |
Python package for testing strandedness of RNA-Seq fastq files
|
2023-06-16 |
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cirtap
|
public |
A CLI to handle PATRIC data from the FTP
|
2023-06-16 |
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isafe
|
public |
A program for identifying a favored mutation in positive selective sweep.
|
2023-06-16 |
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cpt_gffparser
|
public |
A Biopython extension package for I/O of GFF files
|
2023-06-16 |
|
liv_utils
|
public |
Liverpool University Basic Tools
|
2023-06-16 |
|
colord
|
public |
A versatile compressor of third generation sequencing reads.
|
2023-06-16 |
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bakdrive
|
public |
Bakdrive finds a minimum set of driver species from real metagenomic samples and simulates fecal microbial transplantation (FMT) process
|
2023-06-16 |
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interproscan
|
public |
InterPro integrates together predictive information about proteins function from a number of partner resources
|
2023-06-16 |
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hormon
|
public |
A tool for annotation of alpha satellite arrays in centromeres of a newly assembled human genome.
|
2023-06-16 |
|
staphb_toolkit
|
public |
A ToolKit of commonly used Public Health Bioinformatics Tools
|
2023-06-16 |
|
bamr
|
public |
A lightweight Python3 bam reader library
|
2023-06-16 |
|
vafator
|
public |
VAFator annotates the variants in a VCF file with technical annotations extracted from one or more BAM alignment files. We implement a set of basic coverage annotations and also more sophisticated published annotations used to assess the quality of every variant call.
|
2023-06-16 |
|
examine
|
public |
A graphical application to visually analyze network modules.
|
2023-06-16 |
|
nanospring
|
public |
NanoSpring is a compression tool for nanopore reads in Fastq files
|
2023-06-16 |
|
nerpa
|
public |
A tool for discovering biosynthetic gene clusters of nonribosomal peptides
|
2023-06-16 |
|
ginpipepy
|
public |
Package for temporal binning of dated sequences in BAM format and fast population size estimate computation
|
2023-06-16 |
|
seq2onehot
|
public |
Encode biological sequences to a one-hot numpy array
|
2023-06-16 |
|
onehot2seq
|
public |
Decode a one-hot numpy array to biological sequences
|
2023-06-16 |
|
harvest-variants
|
public |
Harvest Variants is a pipeline for variant calling on SARS-CoV-2 samples
|
2023-06-16 |
|
bird_tool_utils_python
|
public |
Python utilities used as part of the bird suite of bioinformatic tools.
|
2023-06-16 |
|
liquorice
|
public |
A tool for bias correction and quantification of changes in coverage around regions of interest in cfDNA WGS datasets
|
2023-06-16 |
|
pifcosm
|
public |
PisCoSm is a pipeline to construct supermatrix trees from GenBank data
|
2023-06-16 |
|
clearcnv
|
public |
CNV calling package
|
2023-06-16 |
|
mars
|
public |
Multiple Alignment-based Refinement of SVs (MARS)
|
2023-06-16 |
|
emeraldbgc
|
public |
SMBGC detection tool
|
2023-06-16 |
|
opfi
|
public |
A package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics datasets.
|
2023-06-16 |
|
pathogentrack
|
public |
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data
|
2023-06-16 |
|
gff3toddbj
|
public |
Create a DDBJ annotation file from GFF3 and FASTA files
|
2023-06-16 |
|
autogenes
|
public |
Automatic Gene Selection for Bulk Deconvolution.
|
2023-06-16 |
|
needle
|
public |
Needle: A fast and space-efficient pre-filter for the quantification of very large collections of nucleotide sequences
|
2023-06-16 |
|
calcs
|
public |
Append minimap2's CS tag to a SAM file.
|
2023-06-16 |
|
rust-mdbg
|
public |
An ultra-fast minimizer-space de Bruijn graph (mdBG) implementation, geared towards the assembly of long and accurate reads.
|
2023-06-16 |
|
proteomiqon-labelfreeproteinquantification
|
public |
The tool LabelFreeProteinQuantification estimates protein abundances using quantified peptide ions.
|
2023-06-16 |
|
uscdc-datasets-sars-cov-2
|
public |
Benchmark datasets for WGS analysis of SARS-CoV-2
|
2023-06-16 |
|
miidl
|
public |
A Python package for microbial biomarkers identification powered by interpretable deep learning
|
2023-06-16 |
|
proteomiqon-joinquantpepionswithproteins
|
public |
The tool JoinQuantPepIonsWithProteins combines results from ProteinInference and PSMBasedQuantification.
|
2023-06-16 |
|
proteomiqon-labeledproteinquantification
|
public |
The tool LabeledProteinQuantification combines the results from ProteomIQon ProteinInference and ProteomIQon PSMBasedQuantification
|
2023-06-16 |
|
metaclock
|
public |
A python package for facilitating strain-level phylogenetic and molecular clock analysis
|
2023-06-16 |
|
anadama2
|
public |
AnADAMA2: Another Automated Data Analysis Management Application 2
|
2023-06-16 |
