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gimmemotifs-minimal
|
public |
Motif prediction pipeline and various motif-related tools
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2023-11-22 |
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hpcblast
|
public |
A wrapper for NCBI-BLAST+ suite which provides a simple and efficient method to accelerate the blast search
|
2023-11-22 |
|
qualimap
|
public |
Quality control of alignment sequencing data and its derivatives like feature counts
|
2023-11-21 |
|
srnaminer
|
public |
sRNAminer: a Multifunctional Toolkit for Next Generation Sequencing Small RNA Data Mining
|
2023-11-21 |
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gapmm2
|
public |
gapmm2: gapped alignment using minimap2
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2023-11-17 |
|
lorax
|
public |
A long-read analysis toolbox for cancer genomics
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2023-11-17 |
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mimseq
|
public |
Modification-induced misincorporation tRNA sequencing.
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2023-11-16 |
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deeparg
|
public |
A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes
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2023-11-15 |
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hic2cool
|
public |
A converter between .hic files (from juicer) and single-resolution or multi-resolution .cool files (for cooler).
|
2023-11-15 |
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goalign
|
public |
goalign is a set of command line tools to manipulate multiple alignments
|
2023-11-14 |
|
deepbgc
|
public |
DeepBGC - Biosynthetic Gene Cluster detection and classification
|
2023-11-12 |
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fit_nbinom
|
public |
Script to fit negative binomial distributions via maximum likelihood estimation.
|
2023-11-11 |
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brooklyn_plot
|
public |
Gene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus RNA-sequencing data
|
2023-11-08 |
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dgenies
|
public |
Dotplot large Genomes in an Interactive, Efficient and Simple way
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2023-11-07 |
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amptk
|
public |
AMPtk: Amplicon tool kit for processing high throughput amplicon sequencing data.
|
2023-11-07 |
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blastbesties
|
public |
Rapid discovery of reciprocal best blast pairs from BLAST output files.
|
2023-11-07 |
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nmrml2isa
|
public |
nmrml2isa - nmrML to ISA-Tab parsing tool
|
2023-11-07 |
|
scmap-cli
|
public |
CLI scripts for the scmap package
|
2023-11-07 |
|
snakesv
|
public |
snakeSV: Flexible framework for large-scale SV discovery
|
2023-11-06 |
|
perl-metabolomics-fragment-annotation
|
public |
Perl extension for fragment annotation in metabolomics
|
2023-11-04 |
|
omark
|
public |
OMArk - Proteome quality assesment based on OMAmer placements
|
2023-11-03 |
|
isocor
|
public |
A Isotope Correction for mass spectrometry labeling experiments
|
2023-11-02 |
|
mtm-align
|
public |
Align multiple protein structures
|
2023-11-02 |
|
r-pspecterlib
|
public |
Proteomics R package for matching peaks in digested and intact proteomics
|
2023-11-01 |
|
dna_features_viewer
|
public |
Plot features from DNA sequences (e.g. Genbank) with Python
|
2023-11-01 |
|
catch
|
public |
A package for designing compact and comprehensive capture probe sets.
|
2023-11-01 |
|
phantasm-xenogi
|
public |
xenoGI for PHANTASM
|
2023-10-31 |
|
mzmine
|
public |
Integrative analysis of multimodal mass spectrometry data
|
2023-10-30 |
|
atlas-fastq-provider
|
public |
A package to provide FASTQs via download or file system linking.
|
2023-10-30 |
|
vcf2cytosure
|
public |
Convert VCF with structural variations to CytoSure format
|
2023-10-30 |
|
itolparser
|
public |
Small script to produce iTOL colorstrip metadata files from a table
|
2023-10-29 |
|
phylogenize
|
public |
Phylogenize is a tool that allows users to link microbial genes to environments, accounting for phylogeny.
|
2023-10-29 |
|
args_oap
|
public |
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
|
2023-10-28 |
|
gdmicro
|
public |
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data
|
2023-10-28 |
|
pygenomeviz
|
public |
A genome visualization python package for comparative genomics
|
2023-10-28 |
|
fastmlst
|
public |
A Fast Multilocus Sequence Typing scan against PubMLST typing schemes
|
2023-10-27 |
|
auriclass
|
public |
AuriClass is a tool for quickly predicting the clade of a Candida auris genome.
|
2023-10-27 |
|
bismark
|
public |
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away.
|
2023-10-26 |
|
microhapdb
|
public |
Portable database of microhaplotype marker and allele frequency data.
|
2023-10-25 |
|
gndiff
|
public |
GNdiff compares scientific names from two files
|
2023-10-25 |
|
arvados-cwl-runner
|
public |
Arvados Common Workflow Language runner
|
2023-10-25 |
|
mavis-config
|
public |
Config validation for running MAVIS via Snakemake
|
2023-10-23 |
|
graphanalyzer
|
public |
A tool to automatically interpret the outputs generated by vConTACT2 when using the INPHARED database
|
2023-10-23 |
|
uropa
|
public |
UROPA (Universal RObust Peak Annotator) is a command line based tool, intended for genomic region annotation from e.g. peak calling.
It detects the most appropriate annotation by taking parameters such as feature type, anchor, direction and strand into account.
Furthermore, it allows filtering for GTF attribute values, e.g. protein_coding.
|
2023-10-22 |
|
knock-knock
|
public |
toolkit for analyzing CRISPR knock-in experiments
|
2023-10-20 |
|
rapgreen
|
public |
Manipulate and annotate phylogenetic trees
|
2023-10-19 |
|
talon
|
public |
TALON is a Python package for identifying and quantifying known and novel
genes/isoforms in long-read transcriptome data sets. TALON is
technology-agnostic in that it works from mapped SAM files,
allowing data from different sequencing platforms
(i.e. PacBio and Oxford Nanopore) to be analyzed side by side.
|
2023-10-18 |
|
redundans
|
public |
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
|
2023-10-18 |
|
metapi
|
public |
A general metagenomics data mining system focus on robust microbiome research
|
2023-10-18 |
|
hamronization
|
public |
Tool to convert and summarize AMR gene detection outputs using the hAMRonization specification
|
2023-10-18 |
