| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-biocbaseutils | public | General utility functions for developing Bioconductor packages | 2025-04-22 |
| bioconductor-ompbam | public | C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files | 2025-04-22 |
| bioconductor-rbwa | public | R wrapper for BWA-backtrack and BWA-MEM aligners | 2025-04-22 |
| bioconductor-rgoslin | public | Lipid Shorthand Name Parsing and Normalization | 2025-04-22 |
| anansescanpy | public | implementation of scANANSE for scanpy objects in Python | 2025-04-22 |
| coolpuppy | public | A versatile tool to perform pile-up analysis on Hi-C data in .cool format | 2025-04-22 |
| h5sparse | public | Scipy sparse matrix in HDF5. | 2025-04-22 |
| tb-ml | public | A simple tool for creating machine learning antimicrobial resistance prediction pipelines using Docker containers for M. tuberculosis. | 2025-04-22 |
| sashimi-py | public | This is an pure Python version of sashimi plot | 2025-04-22 |
| sanntis | public | SMBGC Annotation using Neural Networks Trained on Interpro Signatures. | 2025-04-22 |
| svhip | public | Retrainable machine learning pipeline for the detection of secondary structure conservation on a genome-level. | 2025-04-22 |
| physiofit_data_manager | public | Handle data input management for physiofit4galaxy | 2025-04-22 |
| pyrovelocity | public | Probabilistic RNA velocity for cell fate uncertainty estimation | 2025-04-22 |
| strandphaser | public | Phase Strand-seq data | 2025-04-22 |
| args_oap | public | ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database | 2025-04-22 |
| trand | public | transcript event and distance | 2025-04-22 |
| psm-utils | public | Common utilities for parsing and handling peptide-spectrum matches and search engine results. | 2025-04-22 |
| rnahybrid | public | RNAhybrid is a tool for finding the minimum free energy hybridization of a long and a short RNA. | 2025-04-22 |
| r-crisprcleanr | public | Analysis of CRISPR functional genomics, remove false positive due to CNVs. | 2025-04-22 |
| r-enchantr | public | Analysis of immune repertoires. QC and reports for the analysis of AIRR-seq data with Immcantation | 2025-04-22 |
| scitrack | public | SciTrack provides basic logging capabilities to track scientific computations. | 2025-04-22 |
| ampcombi | public | A parsing tool to convert and summarise the outputs from multiple AMP detection tools. | 2025-04-22 |
| segmetrics | public | A Python package implementing image segmentation and object detection performance measures, for biomedical image analysis and beyond. | 2025-04-22 |
| r-calder2 | public | CALDER is a Hi-C analysis tool for the analysis of hierarchical chromatin interactions | 2025-04-22 |
| pavfinder | public | PAVFinder is a Python package that detects structural variants from de novo assemblies. | 2025-04-22 |
