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sepp
|
public |
SATe-enabled phylogenetic placement
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2024-08-29 |
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pygcap
|
public |
Python package for probe-based gene cluster finding in large microbial genome database.
|
2024-08-28 |
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maegatk
|
public |
Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
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2024-08-27 |
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argnorm
|
public |
Normalize antibiotic resistance genes (ARGs) abundance tables (e.g., from metagenomics) by using the ARO ontology (developed by CARD).
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2024-08-26 |
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metav
|
public |
Rapid detection and classification of viruses in metagenomics sequencing.
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2024-08-26 |
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perl-parallel-forkmanager
|
public |
A simple parallel processing fork manager
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2024-08-26 |
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jclusterfunk
|
public |
A command line tool with a bunch of functions for trees
|
2024-08-26 |
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pasty
|
public |
A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
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2024-08-26 |
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itolapi
|
public |
API for interacting with itol.embl.de
|
2024-08-26 |
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sccmec
|
public |
A tool for typing SCCmec cassettes in assemblies
|
2024-08-25 |
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camlhmp
|
public |
Classification through yAML Heuristic Mapping Protocol
|
2024-08-25 |
|
pling
|
public |
Pling computes the rearrangement distance between plasmids and clusters on their basis
|
2024-08-24 |
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gxformat2
|
public |
Galaxy Workflow Format 2 Descriptions
|
2024-08-23 |
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bpipe
|
public |
Bpipe - a tool for running and managing bioinformatics pipelines
|
2024-08-23 |
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mimsi
|
public |
A Deep Mulitple Instance Learning Classifier for Microsatellite Instability
|
2024-08-22 |
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popoolation2
|
public |
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences.
|
2024-08-22 |
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snakemake-executor-plugin-tes
|
public |
A Snakemake executor plugin for submitting jobs to a GA4GH TES cluster.
|
2024-08-22 |
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pathogen-embed
|
public |
Create reduced dimension embeddings for pathogen sequences
|
2024-08-22 |
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sigprofilerassignment
|
public |
SigProfilerAssignment - Assignment of known mutational signatures to individual samples and individual somatic mutations
|
2024-08-22 |
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pyseer
|
public |
Sequence Element Enrichment Analysis (SEER), python implementation
|
2024-08-22 |
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cami-opal
|
public |
OPAL assesses and compares the performance of taxonomic metagenome profilers.
|
2024-08-21 |
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strdust
|
public |
Tandem repeat genotyper for long reads.
|
2024-08-21 |
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mquad
|
public |
MQuad: Mixture Model for Mitochondrial Mutation detection in single-cell omics data.
|
2024-08-21 |
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bbmix
|
public |
BBMix: inference of beta-binomial mixture model
|
2024-08-21 |
|
gmwi2
|
public |
Enhanced Health Status Prediction from Gut Microbiome Taxonomic Profiles
|
2024-08-21 |
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vcfsim
|
public |
Script for generating simulated VCF's leveraging a coalescent simulating backend.
|
2024-08-21 |
|
ms2query
|
public |
Reliable and fast MS/MS spectral based analogue search
|
2024-08-20 |
|
cellsnp-lite
|
public |
Efficient genotyping bi-allelic SNPs on single cells
|
2024-08-20 |
|
cloci
|
public |
Co-occurrence Locus and Orthologous Cluster Identifier
|
2024-08-20 |
|
xclone
|
public |
Inference of clonal Copy Number Alterations in single cells.
|
2024-08-20 |
|
abritamr
|
public |
Running AMRFinderPlus for MDU
|
2024-08-20 |
|
snakemake-storage-plugin-fs
|
public |
A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync
|
2024-08-19 |
|
segalign-galaxy
|
public |
SegAlign: A Scalable GPU-Based Whole Genome Aligner
|
2024-08-19 |
|
segalign-full
|
public |
SegAlign: A Scalable GPU-Based Whole Genome Aligner
|
2024-08-19 |
|
plasnet
|
public |
Clustering, visualising and exploring plasmid networks
|
2024-08-19 |
|
snakemake-interface-storage-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its storage plugins.
|
2024-08-19 |
|
graphbin
|
public |
GraphBin: Refined binning of metagenomic contigs using assembly graphs
|
2024-08-19 |
|
alen
|
public |
Simple terminal sequence alignment viewer
|
2024-08-19 |
|
pipits
|
public |
PIPITS: An automated pipeline for analyses of fungal internal transcribed spacer (ITS) sequences from the Illumina sequencing platform
|
2024-08-19 |
|
dice
|
public |
Cell lineage reconstruction from single-cell CNA data
|
2024-08-17 |
|
nanocount
|
public |
Transcript abundance estimation from Nanopore *direct-RNA sequencing* datasets
|
2024-08-16 |
|
haplotaglr
|
public |
Haplotagging individual long reads using known haplotype information.
|
2024-08-16 |
|
varfish-server-worker
|
public |
Rust-based tool for the heavy lifting in varfish-server.
|
2024-08-16 |
|
metabinner
|
public |
Ensemble binning method to recover individual genomes from complex microbial communities
|
2024-08-16 |
|
pyrodigal-gv
|
public |
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
|
2024-08-15 |
|
roadies
|
public |
Reference-free Orthology-free Alignment-free DIscordance aware Estimation of Species tree (ROADIES)
|
2024-08-15 |
|
pia
|
public |
PIA is a toolbox for MS based protein inference and identification analysis.
|
2024-08-14 |
|
snakemake-executor-plugin-googlebatch
|
public |
Snakemake executor plugin for Google Batch
|
2024-08-14 |
|
scar
|
public |
scAR (single-cell Ambient Remover) is a deep learning model for ambient signal removal in droplet-based single cell omicsis.
|
2024-08-14 |
|
pymochi
|
public |
Neural networks to quantify energies, energetic couplings, epistasis and allostery from deep mutational scanning data
|
2024-08-14 |
