| Package Name | Access | Summary | Updated |
|---|---|---|---|
| metabuli | public | Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid | 2025-04-22 |
| repic | public | REPIC - an ensemble learning approach to cryo-EM particle picking. | 2025-04-22 |
| perl-retroseq | public | RetroSeq: discovery and genotyping of TEVs from reads in BAM format. | 2025-04-22 |
| abromics_galaxy_json_extractor | public | Tool to convert Galaxy AMR output to abromics project | 2025-04-22 |
| genoflu | public | Influenza data pipeline to automate genotyping assignment. | 2025-04-22 |
| pdivas | public | PDIVAS: Pathogenicity predictor of Deep-Intronic Variants causing Aberrant Splicing | 2025-04-22 |
| cpc2 | public | Coding Potential Calculator 2 (CPC2) | 2025-04-22 |
| nrpys | public | Python language bindings for nrps-rs substrate specificity predictor. | 2025-04-22 |
| annonars | public | Genome annotation based on Rust and RocksDB. | 2025-04-22 |
| matchmsextras | public | Additional network analysis functions for matchms | 2025-04-22 |
| panfeed | public | Compute gene-cluster specific k-mers over a pangenome | 2025-04-22 |
| callingcardstools | public | An API and collection of cmd line tools to work with calling cards sequencing data | 2025-04-22 |
| methphaser | public | MethPhaser: methylation-based haplotype phasing of human genomes | 2025-04-22 |
| hificnv | public | Copy number variant caller and depth visualization utility for PacBio HiFi reads | 2025-04-22 |
| r-ccqtl | public | CCQTL is a wrapper around the R/qtl2 (Broman et al, Genetics 2019 10.1534/genetics.118.301595) functions, with hard-coded parameters tailored for QTL mapping in the Collaborative Cross. | 2025-04-22 |
| quickbam | public | Parallel BAM file access API for high throughput sequence analysis informatics | 2025-04-22 |
| brawn | public | A tool for handling repetitive insertions into sequence alignments. | 2025-04-22 |
| mgems | public | mGEMS - sequencing data binning based on probabilistic classification | 2025-04-22 |
| wgd | public | wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication | 2025-04-22 |
| rmats-long | public | rMATS-long is an integrated computational workflow for long-read RNA-seq data | 2025-04-22 |
| deeplcretrainer | public | Evaluating DeepLC performance and retraining prediction models. | 2025-04-22 |
| braker3 | public | BRAKER3 is the latest pipeline in the BRAKER suite | 2025-04-22 |
| hiphase | public | Small and structural variant phasing tool for PacBio HiFi reads | 2025-04-22 |
| seqverify | public | Seqverify analyzes whole genome sequencing data for gene-editing verification. | 2025-04-22 |
| fununifrac | public | A repository to implement UniFrac, but on functional profiles of metagenomic data. | 2025-04-22 |
