| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-alabaster.schemas | public | Schemas for the Alabaster Framework | 2025-04-22 |
| r-mytai | public | Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2017) <doi:10.1093/bioinformatics/btx835>). The aim of this tool is to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest (Drost et al. (2016) <doi:10.1101/051565>). | 2025-04-22 |
| r-wormbase | public | Fetch Caenorhabditis elegans genome annotations from WormBase. | 2025-04-22 |
| pedesigner | public | A tool for prime-editing guideRNA (pegRNA) design | 2025-04-22 |
| nanometa-live | public | Workflow and GUI for real-time species classification and pathogen characterization of nanopore sequence reads. | 2025-04-22 |
| python-monovar | public | single cell joint genotyper, patched version | 2025-04-22 |
| hlafreq | public | Download and combine HLA frequency data from multiple studies. | 2025-04-22 |
| wfa2-lib | public | Wavefront alignment algorithm library v2 | 2025-04-22 |
| skc | public | Shared k-mer content between two genomes | 2025-04-22 |
| decoupler | public | Ensemble of methods to infer biological activities from omics data | 2025-04-22 |
| r-crbhits | public | CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R. | 2025-04-22 |
| namfinder | public | Finds Non-overlapping Approximate Matches (NAMs) between query and reference sequences using strobemers | 2025-04-22 |
| mkdesigner | public | Genome-wide design of markers for PCR-based genotyping from NGS data. | 2025-04-22 |
| table2asn | public | table2asn is a command-line program that creates sequence records for submission to GenBank - replaces tbl2asn. | 2025-04-22 |
| viromeqc | public | Provides an enrichment score for VLP viromes with respect to metagenomes | 2025-04-22 |
| seqfold | public | Predict the minimum free energy and structure of nucleic acids. | 2025-04-22 |
| derna | public | RNA sequence design for a target protein sequence. | 2025-04-22 |
| saccharis | public | A CAZyme discovery tool. Easily create phylogenetic trees from FASTA files and CAZyme families. | 2025-04-22 |
| acdc | public | (a)utomated (c)ontamination (d)etection and (c)onfidence estimation for single-cell genome data | 2025-04-22 |
| chromograph | public | Chromograph is a python package to create PNG images from genetics data such as BED and WIG files. | 2025-04-22 |
| tksm | public | Very modular, very cool long-read transcriptomic simulator | 2025-04-22 |
| gfflu | public | Annotate Influenza A virus gene segment sequences and output GFF3 files. | 2025-04-22 |
| naibr-plus | public | Identify novel adjacencies created by structural variations using linked-read data | 2025-04-22 |
| vcf2circos | public | A python package based on Plotly to help generate Circos plots from a VCF file or a JSON configuration file. | 2025-04-22 |
| perl-bio-bpwrapper | public | Bio::BPWrapper -- command-line utilities for Bio::Perl | 2025-04-22 |
