About Anaconda Help Download Anaconda

bioconda / packages

Package Name Access Summary Updated
anglerfish public Anglerfish, a tool to demultiplex Illumina libraries from ONT data 2024-09-13
micom public Microbial community modeling based on cobrapy. 2024-09-12
irescue public A tool to quantify transposable elements expression in scRNA-seq. 2024-09-12
checkqc public A simple program to parse Illumina NGS data and check it for quality criteria. 2024-09-12
flumutdb public Utility module for FluMut database. 2024-09-12
geofetch public Downloads data and metadata from GEO and SRA and creates standard PEPs. 2024-09-11
callingcardstools public An API and collection of cmd line tools to work with calling cards sequencing data 2024-09-11
tribal public TRIBAL is a package to infer B cell lineage trees from single-cell RNA sequencing data. 2024-09-11
schpl public Hierarchical progressive learning pipeline for single-cell RNA-sequencing datasets 2024-09-11
diphase public A diploid genome phasing tool 2024-09-11
synapseclient public Python client for Synapse 2024-09-10
toulligqc public A post sequencing QC tool for Oxford Nanopore sequencers. 2024-09-10
duplex-tools public Duplex Tools contains a set of utilities for dealing with ONT Duplex sequencing data. 2024-09-10
xengsort public A fast xenograft read sorter based on space-efficient k-mer hashing 2024-09-10
pod5 public Oxford Nanopore Technologies Pod5 File Format Python API and Tools. 2024-09-10
freebayes public Bayesian haplotype-based polymorphism discovery and genotyping 2024-09-10
mtnucratio public A small tool to determine MT to Nuclear ratios for NGS data. 2024-09-10
lib-pod5 public Python bindings for the POD5 file format. 2024-09-10
perl-mce-shared public MCE extension for sharing data supporting threads and processes 2024-09-10
telometer public A simple regular expression based method for measuring individual, chromosome-specific telomere lengths from long-read sequencing data. 2024-09-09
seqchromloader public Sequence and chromatin dataloader for deep learning 2024-09-09
graphmap public A highly sensitive and accurate mapper for long, error-prone reads 2024-09-09
snakemake-executor-plugin-drmaa public A snakemake executor plugin for submission of jobs via DRMAA. 2024-09-09
scnic public SCNIC: Sparse Cooccurence Network Investigation for Compositional data 2024-09-06
annonars public Genome annotation based on Rust and RocksDB. 2024-09-06
cami-amber public AMBER: Assessment of Metagenome BinnERs 2024-09-06
shorttracks public ShortTracks : Useful length- and strand-based coverage files (bigwig) from small RNA-seq alignments (BAM) 2024-09-05
strucvis public strucVis : Display small RNA depth of coverage on a predicted RNA secondary structure 2024-09-05
starcatpy public Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs. 2024-09-05
handyreadgenotyper public Tool for training model and classifying reads from environmental ONT amplicon sequencing. 2024-09-05
annotsv public Annotation and Ranking of Structural Variation 2024-09-05
allo public Multi-mapped read rescue strategy for gene regulatory analyses 2024-09-05
clipandmerge public Clip&Merge is a tool to clip off adapters from sequencing reads and merge overlapping paired end reads together. 2024-09-05
dedup public DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments). 2024-09-05
bcbio-gff public A Python library to read and write Generic Feature Format (GFF). 2024-09-05
beacon2-import public Seamlessly import and query genomic variant data from a beacon 2024-09-04
jvarkit public Java utilities for Bioinformatics. 2024-09-03
mehari public VEP-like tool for sequence ontology and HGVS annotation of VCF files written in Rust. 2024-09-03
beav public beav: Bacterial genome and mobile element annotation pipeline 2024-09-02
wfmash public a pangenome-scale aligner 2024-09-02
blast2galaxy public A Python package with a CLI and API to perform BLAST queries against Galaxy servers 2024-09-02
dbcanlight public A lightweight CAZyme annotation tool 2024-08-30
samestr public SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles. 2024-08-30
ezomero public A module with convenience functions for writing Python code that interacts with OMERO 2024-08-30
inspector public Accurate long-read de novo assembly evaluation with Inspector 2024-08-30
kegalign-full public KegAlign: A Scalable GPU-Based Whole Genome Aligner 2024-08-29
cnmf public Consensus NMF for scRNA-Seq data. 2024-08-29
anndata2ri public Convert between AnnData and SingleCellExperiment 2024-08-29
wisecondorx public WIthin-SamplE COpy Number aberration DetectOR, including sex chromosomes 2024-08-29
pango-collapse public Collapse Pango sublineages up to user defined parent lineages. 2024-08-29

© 2025 Anaconda, Inc. All Rights Reserved. (v4.0.7) Legal | Privacy Policy