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bioconda / packages

Package Name Access Summary Updated
pkiss public RNA secondary structure prediction including K-type and kissing hairpin- pseudoknots. 2025-10-02
crabs public Crabs (Creating Reference databases for Amplicon-Based Sequencing) is a program to download and curate reference databases for eDNA metabarcoding analyses. 2025-10-02
mgnify-pipelines-toolkit public Collection of scripts and tools for MGnify pipelines. 2025-10-02
feems public Fast Estimation of Effective Migration Surfaces. 2025-10-02
r-rubic public No Summary 2025-10-02
isoquant public IsoQuant is a tool for reference-based analysis of long RNA reads, such as gene/transcript quantification and discovery. 2025-10-02
nanomotif public Identifying methlyation motifs in nanopore data. 2025-10-02
t-coffee public A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence. 2025-10-02
gimmemotifs public Motif prediction pipeline and various motif-related tools. 2025-10-02
gimmemotifs-minimal public Motif prediction pipeline and various motif-related tools. 2025-10-02
snakemake-minimal public A popular workflow management system aiming at full in-silico reproducibility. 2025-10-02
snakemake public A popular workflow management system aiming at full in-silico reproducibility. 2025-10-02
msaprobs public MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm for protein sequences. 2025-10-02
secedo public SNV-based clustering for single-cell sequencing data 2025-10-02
shovill public Microbial assembly pipeline for Illumina paired-end reads 2025-10-02
cell2cell public Inferring cell-cell interactions from transcriptomes with cell2cell. 2025-10-02
rnaredprint public Tree-decomposition based dynamic programming algorithm for multiple target RNA design 2025-10-02
coreprofiler public CoreProfiler, a robust and integrable cgMLST software. 2025-10-02
linearfold public Linear-Time Prediction for RNA Secondary Structures 2025-10-02
eternafold public RNA structure prediction algorithm improved through crowdsourced training data 2025-10-02
orthanq public Uncertainty aware HLA typing and general haplotype quantification. 2025-10-02
scallop public Scallop is a reference-based transcriptome assembler for RNA-seq 2025-10-02
bioconda-repodata-patches public Generate tweaks to index metadata, hosted separately from anaconda.org index. 2025-10-02
seqsero2 public Salmonella serotype prediction from genome sequencing data. 2025-10-02
seqforge public SeqForge: A genomics toolkit for FASTA processing, BLAST orchestration, and motif mining. 2025-10-01

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