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allelecodes
|
public |
Allele Code Assignment Algorithm for cgMLST schemes
|
2025-08-27 |
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varpubs
|
public |
Tool for finding PubMed evidence on genetic variants and generating LLM-based summaries
|
2025-08-27 |
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artic
|
public |
ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore.
|
2025-08-27 |
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pysradb
|
public |
Python package for retrieving metadata and downloading datasets from SRA/ENA/GEO
|
2025-08-27 |
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jcvi
|
public |
Python utility libraries on genome assembly, annotation, and comparative genomics.
|
2025-08-27 |
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bioconda-repodata-patches
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public |
Generate tweaks to index metadata, hosted separately from anaconda.org index.
|
2025-08-27 |
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binchicken
|
public |
Targeted recovery of low abundance metagenome assembled genomes through intelligent coassembly
|
2025-08-26 |
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seismic-rna
|
public |
SEISMIC-RNA software by the Rouskin Lab.
|
2025-08-26 |
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cagecleaner
|
public |
Genomic redundancy removal tool for cblaster hit sets.
|
2025-08-26 |
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probe
|
public |
Evaluate and visualize protein interatomic packing
|
2025-08-26 |
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pyani-plus
|
public |
Whole-genome classification of microbes using Average Nucleotide Identity and similar methods.
|
2025-08-26 |
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pyopenms
|
public |
Python bindings for OpenMS, an open-source software C++ library for LC-MS data management and analyses.
|
2025-08-26 |
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harpy
|
public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
|
2025-08-25 |
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cats-rb
|
public |
Reference-based transcriptome assembly quality assessment tool.
|
2025-08-25 |
|
cats-rf
|
public |
Reference-free transcriptome assembly quality assessment tool.
|
2025-08-25 |
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alignoth
|
public |
A tool for creating alignment plots from bam files.
|
2025-08-25 |
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gubbins
|
public |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
|
2025-08-25 |
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perl-minion
|
public |
Job queue
|
2025-08-25 |
|
kmercamel
|
public |
KmerCamel🐫 - compressing k-mer sets using masked superstrings.
|
2025-08-25 |
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pgscatalog-utils
|
public |
Utilities for working with PGS Catalog API and scoring files.
|
2025-08-25 |
|
openms
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses.
|
2025-08-24 |
|
libopenms
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses.
|
2025-08-24 |
|
openms-thirdparty
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses.
|
2025-08-24 |
|
porechop_abi
|
public |
Adapter inferrence and removal of Oxford Nanopore reads
|
2025-08-23 |
|
align_trim
|
public |
ARTIC align_trim: A tool for trimming amplicon sequencing primers from aligned reads.
|
2025-08-22 |
