|
micro_razers
|
public |
MicroRazerS - Rapid Alignment of Small RNA Reads
|
2024-12-14 |
|
apu-label-propagation
|
public |
Adaptive Positive-Unlabelled label propagation
|
2024-12-14 |
|
simka
|
public |
Simka and simkaMin are de novo comparative metagenomics tools. Simka represents each dataset as a k-mer spectrum and computes several classical ecological distances between them. SimkaMin outputs approximate (but very similar) results by subsampling the kmer space and requires much less computational resources.
|
2024-12-14 |
|
ucsc-mrnatogene
|
public |
convert PSL alignments of mRNAs to gene annotations
|
2024-12-14 |
|
r-qtlseqr
|
public |
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis.
|
2024-12-14 |
|
pbsim
|
public |
No Summary
|
2024-12-14 |
|
r-recetox-waveica
|
public |
Removal of batch effects for large-scale untargeted metabolomics data based on wavelet transform.
|
2024-12-14 |
|
gadem
|
public |
A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery
|
2024-12-14 |
|
genomescope2
|
public |
Reference-free profiling of polyploid genomes
|
2024-12-14 |
|
phylommand
|
public |
Command-line phylogenetics tools.
|
2024-12-14 |
|
ucsc-fasplit
|
public |
Split an fa file into several files.
|
2024-12-14 |
|
ucsc-validatemanifest
|
public |
Validates the ENCODE3 manifest.txt file.
|
2024-12-14 |
|
ucsc-chromgraphfrombin
|
public |
Convert chromGraph binary to ascii format.
|
2024-12-14 |
|
prodigal-gv
|
public |
A fork of Prodigal meant to improve gene calling for giant viruses
|
2024-12-14 |
|
paraclu
|
public |
Paraclu finds clusters in data attached to sequences.
|
2024-12-14 |
|
balrog
|
public |
Balrog: A universal protein model for prokaryotic gene prediction
|
2024-12-14 |
|
cfm
|
public |
Tools for applying Competitive Fragmentation Modeling (CFM) to spectrum prediction and metabolite identification tasks, as well as a tools for fragment generation and peak annotation.
|
2024-12-14 |
|
dascrubber
|
public |
Alignment-based Scrubbing pipeline
|
2024-12-14 |
|
ucsc-fafiltern
|
public |
Get rid of sequences with too many N's
|
2024-12-14 |
|
ucsc-paranodestop
|
public |
Shut down parasol node daemons on a list of machines
|
2024-12-14 |
|
codingquarry
|
public |
CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.
|
2024-12-14 |
|
rerconverge
|
public |
RERconverge is a set of software written in R that estimates the correlation between relative evolutionary rates of gene.
|
2024-12-14 |
|
fastool
|
public |
A simple and quick tool to read huge FastQ and FastA files (both normal and gzipped) and manipulate them.
|
2024-12-14 |
|
squigulator
|
public |
A tool for simulating nanopore raw signal data
|
2024-12-14 |
|
fqtk
|
public |
A toolkit for working with FASTQ files.
|
2024-12-14 |
|
fastq-scan
|
public |
FASTQ summary statistics in JSON format
|
2024-12-14 |
|
rustybam
|
public |
Mitchell Vollger's bioinformatics rust utilities.
|
2024-12-14 |
|
ucsc-pslxtofa
|
public |
convert pslx (with sequence) to fasta file
|
2024-12-14 |
|
genomeconstellation
|
public |
Fast, accurate and versatile k-mer based classification system
|
2024-12-14 |
|
mp-est
|
public |
Maximum Pseudo-likelihood Estimation of Species Trees
|
2024-12-14 |
|
ratatosk
|
public |
Hybrid error correction of long reads using colored de Bruijn graphs
|
2024-12-14 |
|
linearfold
|
public |
Linear-Time Prediction for RNA Secondary Structures
|
2024-12-14 |
|
niemagraphgen
|
public |
Niema's C++ implementations of graph generators
|
2024-12-14 |
|
kfoots
|
public |
The package provides methods for fitting multivariate count data with a mixture model or a hidden markov model. Each mixture component is a negative multivariate random variable and an EM algorithm is used to maximize the likelihood.
|
2024-12-14 |
|
gdc
|
public |
Utility designed for compression of genome collections from the same species.
|
2024-12-14 |
|
ucsc-maffrags
|
public |
Collect MAFs from regions specified in a 6 column bed file
|
2024-12-14 |
|
perl-want
|
public |
No Summary
|
2024-12-14 |
|
scrm
|
public |
A coalescent simulator for genome-scale sequences
|
2024-12-14 |
|
python-msgpack
|
public |
It's like JSON. But fast and small.
|
2024-12-14 |
|
rapifilt
|
public |
RAPIFILT:RAPId FILTer is a quality control of DNA sequences
|
2024-12-14 |
|
ucsc-netclass
|
public |
Add classification info to net
|
2024-12-14 |
|
perl-dbd-sqlite
|
public |
Self Contained RDBMS in a DBI Driver
|
2024-12-14 |
|
ucsc-qactowig
|
public |
convert from compressed quality score format to wiggle format.
|
2024-12-14 |
|
nextdenovo
|
public |
String graph-based de novo assembler for long reads (CLR, HiFi and ONT)
|
2024-12-14 |
|
bs_call
|
public |
DNA methylation and variant Caller for Bisulfite Sequencing Data.
|
2024-12-14 |
|
ucsc-autoxml
|
public |
Generate structures code and parser for XML file from DTD-like spec
|
2024-12-14 |
|
psdm
|
public |
Compute a pairwise SNP distance matrix from one or two alignment(s)
|
2024-12-14 |
|
strobemap
|
public |
Efficient string matching using strobemers
|
2024-12-14 |
|
kyototycoon
|
public |
a lightweight network server on top of the Kyoto Cabinet key-value database, built for high-performance and concurrency
|
2024-12-14 |
|
ucsc-autosql
|
public |
create SQL and C code for permanently storing
|
2024-12-14 |
