| Package Name | Access | Summary | Updated |
|---|---|---|---|
| seqwin | public | Ultrafast identification of signature sequences in microbial genomes via minimizer graphs | 2025-10-01 |
| snakemake-interface-common | public | Common functions and classes for Snakemake and its plugins. | 2025-10-01 |
| rnablueprint | public | The RNAblueprint library solves the problem of uniformly sampling RNA/DNA sequences compatible to multiple structural constraints and sequence constraints. | 2025-10-01 |
| demuxem | public | DemuxEM is the demultiplexing module of Pegasus, which works on cell-hashing and nucleus-hashing genomics data. | 2025-10-01 |
| mrbayes_volpiano | public | Bayesian Inference of Phylogeny (Volpiano edition) | 2025-10-01 |
| bioconductor-scdblfinder | public | scDblFinder | 2025-10-01 |
| r-dimsum | public | An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies | 2025-10-01 |
| varlociraptor | public | Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control. | 2025-10-01 |
| biobb_mem | public | Biobb_mem is the Biobb module for membrane structure analysis. | 2025-10-01 |
| varpubs | public | Tool for finding PubMed evidence on genetic variants and generating LLM-based summaries | 2025-10-01 |
| vinalc | public | VinaLC: MPI-accelerated molecular docking program for virtual screening. | 2025-10-01 |
| eviann | public | Evidence-based eukaryotic genome annotation software. | 2025-09-30 |
| rnaz | public | predicting structural noncoding RNAs | 2025-09-30 |
| nwalign3 | public | Updated version of nwalign (Needleman-Wunsch global sequence alignment) with Python 3.x compatibility. | 2025-09-30 |
| cellsnp-lite | public | Efficient genotyping bi-allelic SNPs on single cells | 2025-09-30 |
| unimap | public | Unimap is a fork of minimap2 optimized for assembly-to-reference alignment. | 2025-09-30 |
| segemehl | public | Short read mapping with gaps | 2025-09-30 |
| rainbow | public | Efficient tool for clustering and assembling short reads, especially for RAD | 2025-09-30 |
| stacks | public | Stacks is a software pipeline for building loci from short-read sequences. | 2025-09-30 |
| genomepy | public | Install and use genomes & gene annotations the easy way! | 2025-09-30 |
| ms2rescore-rs | public | Rust functionality for the MS²Rescore package | 2025-09-30 |
| kraken | public | Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. | 2025-09-30 |
| kmer-jellyfish | public | Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence | 2025-09-30 |
| libcifpp | public | Library containing code to manipulate mmCIF and PDB files. | 2025-09-30 |
| nf-test | public | nf-test is a simple test framework for Nextflow pipelines. | 2025-09-30 |
