| Package Name | Access | Summary | Updated |
|---|---|---|---|
| secedo | public | SNV-based clustering for single-cell sequencing data | 2025-10-02 |
| shovill | public | Microbial assembly pipeline for Illumina paired-end reads | 2025-10-02 |
| cell2cell | public | Inferring cell-cell interactions from transcriptomes with cell2cell. | 2025-10-02 |
| rnaredprint | public | Tree-decomposition based dynamic programming algorithm for multiple target RNA design | 2025-10-02 |
| linearfold | public | Linear-Time Prediction for RNA Secondary Structures | 2025-10-02 |
| eternafold | public | RNA structure prediction algorithm improved through crowdsourced training data | 2025-10-02 |
| scallop | public | Scallop is a reference-based transcriptome assembler for RNA-seq | 2025-10-02 |
| seqsero2 | public | Salmonella serotype prediction from genome sequencing data. | 2025-10-02 |
| seqforge | public | SeqForge: A genomics toolkit for FASTA processing, BLAST orchestration, and motif mining. | 2025-10-01 |
| bioconductor-rhisat2 | public | R Wrapper for HISAT2 Aligner | 2025-10-01 |
| mccortex | public | De novo genome assembly and multisample variant calling | 2025-10-01 |
| plasann | public | A tool for plasmid annotation and visualization. | 2025-10-01 |
| seqwin | public | Ultrafast identification of signature sequences in microbial genomes via minimizer graphs | 2025-10-01 |
| snakemake-interface-common | public | Common functions and classes for Snakemake and its plugins. | 2025-10-01 |
| rnablueprint | public | The RNAblueprint library solves the problem of uniformly sampling RNA/DNA sequences compatible to multiple structural constraints and sequence constraints. | 2025-10-01 |
| demuxem | public | DemuxEM is the demultiplexing module of Pegasus, which works on cell-hashing and nucleus-hashing genomics data. | 2025-10-01 |
| mrbayes_volpiano | public | Bayesian Inference of Phylogeny (Volpiano edition) | 2025-10-01 |
| bioconductor-scdblfinder | public | scDblFinder | 2025-10-01 |
| r-dimsum | public | An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies | 2025-10-01 |
| varlociraptor | public | Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control. | 2025-10-01 |
| biobb_mem | public | Biobb_mem is the Biobb module for membrane structure analysis. | 2025-10-01 |
| varpubs | public | Tool for finding PubMed evidence on genetic variants and generating LLM-based summaries | 2025-10-01 |
| vinalc | public | VinaLC: MPI-accelerated molecular docking program for virtual screening. | 2025-10-01 |
| eviann | public | Evidence-based eukaryotic genome annotation software. | 2025-09-30 |
| rnaz | public | predicting structural noncoding RNAs | 2025-09-30 |
