| Package Name | Access | Summary | Updated |
|---|---|---|---|
| panman | public | PanMAN | 2025-07-02 |
| rabies | public | RABIES: Rodent Automated Bold Improvement of EPI Sequences. | 2025-07-02 |
| nordic | public | NORDic: a Network-Oriented package for the Repurposing of Drugs | 2025-07-02 |
| endorspy | public | endorS.py calculates endogenous DNA from samtools flagstat files and print to screen. | 2025-07-02 |
| crispresso2 | public | A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments. | 2025-07-02 |
| phabox | public | Virus identification and analysis tool set | 2025-07-02 |
| lorax | public | A long-read analysis toolbox for cancer genomics | 2025-07-02 |
| replidec | public | Replication Cycle Decipher for Phages. | 2025-07-02 |
| fragpipe | public | Pipeline for comprehensive analysis of shotgun proteomics data | 2025-07-02 |
| hybpiper | public | HybPiper is a suite of Python scripts/modules for targeted sequence capture. | 2025-07-02 |
| ucsc-overlapselect | public | Select records based on overlapping chromosome ranges. | 2025-07-02 |
| qcatch | public | QCatch: Quality Control downstream of alevin-fry / simpleaf. | 2025-07-02 |
| ezomero | public | A module with convenience functions for writing Python code that interacts with OMERO. | 2025-07-01 |
| faststructure | public | A variational framework for inferring population structure from SNP genotype data. | 2025-07-01 |
| r-exomedepth | public | Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders. | 2025-06-30 |
| ucsc-facount | public | Count base statistics and CpGs in FA files. | 2025-06-30 |
| ucsc-headrest | public | Return all *but* the first N lines of a file. | 2025-06-30 |
| ucsc-mafcoverage | public | Analyse coverage by maf files - chromosome by. | 2025-06-30 |
| ucsc-ldhggene | public | Load database with gene predictions from a gff file. | 2025-06-30 |
| ucsc-splitfile | public | Split up a file. | 2025-06-30 |
| ucsc-hubcheck | public | Check a track data hub for integrity. | 2025-06-30 |
| ucsc-mafsplit | public | Split multiple alignment files. | 2025-06-30 |
| ucsc-catdir | public | Concatenate files in directory to stdout. | 2025-06-30 |
| ucsc-newprog | public | Make a new C source skeleton. | 2025-06-30 |
| ucsc-featurebits | public | Correlate tables via bitmap projections. | 2025-06-30 |
