| Package Name | Access | Summary | Updated |
|---|---|---|---|
| wtv | public | A library and CLI for ion selection in mass spectrometry data. | 2025-07-07 |
| psosp | public | PSOSP (Prophage SOS-dependency Predictor) | 2025-07-07 |
| pathphynder | public | A workflow for ancient DNA placement into reference phylogenies. | 2025-07-07 |
| matchms | public | Python library for fuzzy comparison of mass spectrum data and other Python objects. | 2025-07-07 |
| chromhmm | public | ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. | 2025-07-07 |
| lassensus | public | Tool for creating Lassa virus consensus sequences | 2025-07-07 |
| tooldistillator | public | Tool to extract and aggregate information from different tool outputs to JSON parsable files | 2025-07-07 |
| perl-cgi | public | A generic file fetching mechanism. | 2025-07-07 |
| cram-archiver | public | A samtools wrapper for CRAM conversion automation. | 2025-07-07 |
| ovrlpy | public | A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data. | 2025-07-07 |
| ensembl-utils | public | Ensembl Python general-purpose utils | 2025-07-07 |
| ncbi-datasets-pyclient | public | NCBI Datasets API | 2025-07-07 |
| ervdetective | public | An efficient pipeline for identification and annotation of endogenous retroviruses (ERVs). | 2025-07-07 |
| ls-gkm | public | gkm-SVM, a sequence-based method for predicting regulatory DNA elements. | 2025-07-03 |
| genome_profiler | public | Prokaryotic genome and plasmid profiling pipeline. | 2025-07-03 |
| repeatmodeler | public | RepeatModeler is a de-novo repeat family identification and modeling package. | 2025-07-03 |
| repeatafterme | public | A package for the extension of repetitive DNA sequences. | 2025-07-03 |
| domclust | public | Effective tool for orthologous grouping in multiple genomes | 2025-07-03 |
| beast | public | BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. | 2025-07-03 |
| primer3-py | public | Python bindings for Primer3 | 2025-07-02 |
| bwa-mem2 | public | The next version of bwa-mem. | 2025-07-02 |
| phasius | public | A rust tool to create phase-block maps from phased cram/bam files. | 2025-07-02 |
| r-lme4qtl | public | Linear mixed models (lme4) with flexible covariance structure for qtl and association analysis. | 2025-07-02 |
| panman | public | PanMAN | 2025-07-02 |
| rabies | public | RABIES: Rodent Automated Bold Improvement of EPI Sequences. | 2025-07-02 |
