| Package Name | Access | Summary | Updated |
|---|---|---|---|
| aster | public | Accurate Species Tree EstimatoR series; a family of optimation algorithms for species tree inference implemented in C++. | 2025-07-21 |
| gw | public | View genomic sequencing data and vcf files | 2025-07-21 |
| squigualiser | public | Visualise ONT raw signals | 2025-07-21 |
| htseq | public | HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments. | 2025-07-21 |
| vamos | public | VNTR annotation using efficient motif selection. | 2025-07-21 |
| gnparser | public | GNparser normalises scientific names and extracts their semantic elements. | 2025-07-21 |
| rdeval | public | A general purpose, multithreaded read analysis and manipulation tool. | 2025-07-21 |
| bioconductor-hmmcopy | public | Copy number prediction with correction for GC and mappability bias for HTS data | 2025-07-21 |
| grz-check | public | grz-check is a tool for validating incoming files of Modellvorhaben ยง64e submissions to Genomrechenzentren (GRZ) in Germany. | 2025-07-21 |
| ensemblcov | public | Parallel threaded variant linker. | 2025-07-21 |
| hmftools-neo | public | Identification of neoepitope and calculation of allele specific neoepitope binding and presentation likelihood. | 2025-07-21 |
| hmftools-sage | public | SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage. | 2025-07-21 |
| hmftools-linx | public | LINX is an annotation, interpretation and visualisation tool for structural variants. | 2025-07-21 |
| hmftools-purple | public | PURPLE is a purity ploidy estimator for tumor samples. | 2025-07-21 |
| hmftools-bam-tools | public | Rapidly process BAMs for various tasks. | 2025-07-21 |
| hmftools-amber | public | Generates a tumor BAF file for use in PURPLE. | 2025-07-21 |
| piscem-infer | public | piscem-infer is a flexible tool to perform target quantification from bulk-sequencing data | 2025-07-20 |
| pydustmasker | public | Python library for identification and masking of low-complexity regions in nucleotide sequences. | 2025-07-19 |
| bygul | public | Bygul is an amplicon read simulating tool that can generate different sample read proportions based on user input. | 2025-07-18 |
| scispacy | public | A full SpaCy pipeline and models for scientific/biomedical documents. | 2025-07-18 |
| pyfastx | public | pyfastx is a python module for fast random access to sequences from plain and gzipped FASTA/Q file | 2025-07-18 |
| pyrodigal | public | Python bindings to Prodigal, an ORF finder for microbial sequences. | 2025-07-18 |
| pyhmmer | public | Cython bindings and Python interface to HMMER3. | 2025-07-18 |
| hal2vg | public | A tool for converting from hal to vg format, as well as other tools generally useful for cactus. | 2025-07-18 |
| gb_taxonomy_tools | public | These are four simple utilities which perform certain manipulations and visualization tasks on GenBank taxonomic information. | 2025-07-18 |
