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piret
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public |
A tool for conducting RNA seq analysis.
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2025-08-28 |
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pin_hic
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public |
A Hi-C scaffolding method
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2025-08-28 |
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polypolish
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public |
Polishing genome assemblies with short reads.
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2025-08-28 |
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popscle
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public |
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
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2025-08-28 |
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bedtk
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public |
Bedtk is a set of simple tools to process BED files.
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2025-08-28 |
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scmidas
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public |
A torch-based integration method for single-cell multi-omic data.
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2025-08-28 |
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myloasm
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public |
myloasm - high-resolution metagenome assembly for (noisy) long reads
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2025-08-28 |
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orthofinder
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public |
Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy!
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2025-08-28 |
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vcontact3
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public |
Viral Contig Automatic Clustering and Taxonomy.
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2025-08-28 |
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repeatmasker
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public |
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
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2025-08-28 |
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viralmsa
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public |
Reference-guided multiple sequence alignment of viral genomes
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2025-08-28 |
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vapor
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public |
VAPOR is a tool for classification of Influenza samples from short read sequence data for further bioinformatics analysis.
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2025-08-28 |
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olivar
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public |
Olivar PCR tiling design
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2025-08-28 |
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freyja
|
public |
Freyja recovers relative lineage abundances from mixed SARS-CoV-2 samples and provides functionality to analyze lineage dynamics.
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2025-08-28 |
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cawlign
|
public |
A tool for aligning consensus sequences to reference genomes.
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2025-08-28 |
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arborator
|
public |
Arborator: Simplifying operationalized pathogen surveillance and outbreak detection.
|
2025-08-28 |
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pyjess
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public |
Cython bindings and Python interface to JESS, a 3D template matching software.
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2025-08-28 |
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pgscatalog.calc
|
public |
Libraries and applications for working with calculated polygenic scores.
|
2025-08-28 |
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gubbins
|
public |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
|
2025-08-28 |
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magmax
|
public |
MAGmax is a robust tool for dereplicating MAGs through bin merging and reassembly.
|
2025-08-28 |
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hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2025-08-28 |
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sawfish
|
public |
Joint structural variant and copy number variant caller for HiFi sequencing data
|
2025-08-28 |
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r-flanders
|
public |
Fast colocalization using AnnData objects in R
|
2025-08-28 |
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flexynesis
|
public |
A deep-learning-based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction.
|
2025-08-28 |
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r-presto
|
public |
Scalable implementation of the Wilcoxon rank sum test and auROC statistic. Interfaces to dense and sparse matrices, as well as genomics analysis frameworks Seurat and SingleCellExperiment.
|
2025-08-28 |
