| Package Name | Access | Summary | Updated |
|---|---|---|---|
| wally | public | Visualization of aligned sequencing reads and genomic variants. | 2025-08-21 |
| dnaapler | public | Reorients assembled microbial sequences | 2025-08-21 |
| twilight | public | TWILIGHT: A high throughput tool for tall and wide multiple sequence alignment. | 2025-08-21 |
| esme_esmf_psmpi_5_12_1 | public | ESMF - Earth System Modeling Framework | 2025-08-21 |
| esme_pnetcdf_psmpi_5_12_1 | public | PnetCDF - Parallel netCDF | 2025-08-21 |
| esme_netcdf-c_psmpi_5_12_1 | public | NetCDF-C - netCDF interface for C | 2025-08-21 |
| esme_hdf5_psmpi_5_12_1 | public | HDF5 - Hierarchical Data Format 5 | 2025-08-21 |
| esme_netcdf-fortran_psmpi_5_12_1 | public | NetCDF-Fortran - netCDF interface for Fortran | 2025-08-21 |
| esme_psmpi_5_12_1 | public | Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support. | 2025-08-21 |
| esme_omb_psmpi_5_12_1 | public | OSU Micro Benchmarks | 2025-08-21 |
| esme_pio_psmpi_5_12_1 | public | ParallelIO - High-level parallel I/O library | 2025-08-21 |
| gxf2bed | public | Fastest GTF/GFF-to-BED converter chilling around | 2025-08-21 |
| btrim | public | This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336) | 2025-08-21 |
| mameshiba | public | mameshiba installs only the dependencies needed to run MameShiba. | 2025-08-21 |
| shiba | public | A versatile method for systematic identification of differential RNA splicing across platforms | 2025-08-21 |
| hmnillumina | public | A parser for Illumina run | 2025-08-21 |
| gentle | public | Software suite for DNA cloning | 2025-08-21 |
| disco | public | Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler. | 2025-08-21 |
| pcne | public | Estimates plasmid copy number from assembled genome. | 2025-08-21 |
| sparseassembler | public | No Summary | 2025-08-21 |
| macsyfinder | public | MacSyFinder: Detection of macromolecular systems in protein datasets using systems modelling and similarity search | 2025-08-21 |
| pyskani | public | PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining. | 2025-08-21 |
| dbg2olc | public | Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies | 2025-08-21 |
| assemblyutility | public | No Summary | 2025-08-21 |
| sparc | public | No Summary | 2025-08-21 |
