| Package Name | Access | Summary | Updated |
|---|---|---|---|
| r-histonehmm | public | histoneHMM is a software to analyse ChIP-seq data of histone modifications with broad genomic footprints like H3K27me3. It allows for calling modified regions in single samples as well as for calling differentially modified regions in a comparison of two samples | 2025-08-28 |
| abundancebin | public | No Summary | 2025-08-28 |
| perl-string-approx | public | No Summary | 2025-08-28 |
| r-liger | public | Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. | 2025-08-28 |
| qglmm | public | Fast Generalized Linear Mixed Models in Python | 2025-08-28 |
| unitig-counter | public | Uses a compressed de Bruijn graph (implemented in GATB) to count unitigs in bacterial populations. | 2025-08-28 |
| oakvar | public | OakVar - Genomic Variant Analysis Platform | 2025-08-28 |
| transrate-tools | public | Command-line tools used by transrate for processing bam files. | 2025-08-28 |
| fastmd5 | public | Fast command-line tool to compute and verify MD5 checksums | 2025-08-28 |
| srf-n-trf | public | Extract specific monomers, motifs, and regions from srf and trf output | 2025-08-28 |
| xunit-wrapper | public | Wrap python functions with a decorator to handle building XUnit reports | 2025-08-28 |
| tssar | public | No Summary | 2025-08-28 |
| canu | public | Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing. | 2025-08-28 |
| pipmir | public | No Summary | 2025-08-28 |
| seqan3 | public | SeqAn3 is the new version of the popular SeqAn template library for the analysis of biological sequences. | 2025-08-28 |
| sadie-antibody | public | The Complete Antibody Library | 2025-08-28 |
| maaslin3 | public | "Refining and extending generalized multivariate linear models for meta-omic association discovery" | 2025-08-28 |
| enrichm | public | EnrichM is a toolbox for comparing the functional composition of population genomes. | 2025-08-28 |
| schemarefinery | public | Tool to refine cg/wgMLST Schemas. | 2025-08-28 |
| bbmapy | public | A Python wrapper for BBTools. | 2025-08-28 |
| clam | public | clam is a tool for classification of callable loci intervals, and accurate estimation of population genetic statistics. | 2025-08-28 |
| bioconductor-motifmatchr | public | Fast Motif Matching in R. | 2025-08-28 |
| r-archr | public | This package is designed to streamline scATAC analyses in R. | 2025-08-28 |
| seqmap | public | SeqMap is a tool for mapping large amount of oligonucleotide to the genome. | 2025-08-28 |
| locidex | public | Locidex: Common search engine for similarity based typing applications. | 2025-08-28 |
