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phasius
|
public |
A rust tool to create phase-block maps from phased cram/bam files
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2025-03-11 |
|
eggnog-mapper
|
public |
Fast genome-wide functional annotation through orthology assignment.
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2025-03-11 |
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easel
|
public |
Easel is an ANSI C code library for computational analysis of biological sequences using probabilistic models.
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2025-03-11 |
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pilea
|
public |
Pilea: profiling bacterial growth dynamics from metagenomes with sketching
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2025-03-11 |
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afragmenter
|
public |
Schema-free, tunable protein domain segmentation tool for AlphaFold structures
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2025-03-11 |
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py_fasta_validator
|
public |
Simply and quickly validate a fasta file. Invalid files return non-zero exit codes
|
2025-03-11 |
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wgsim
|
public |
No Summary
|
2025-03-11 |
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segemehl
|
public |
Short read mapping with gaps
|
2025-03-11 |
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rrmscorer
|
public |
RRMScorer (RRM-RNA score predictor) predicts how likely a single RRM is to bind ssRNA
|
2025-03-11 |
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pear
|
public |
paired-end read merger
|
2025-03-11 |
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dysgu
|
public |
A collection of tools for calling structural variants using short or long reads
|
2025-03-11 |
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plasann
|
public |
A tool for plasmid annotation and visualization
|
2025-03-11 |
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snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-03-11 |
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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-03-11 |
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iseq
|
public |
iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
|
2025-03-11 |
|
snakedeploy
|
public |
Helper for deploying published Snakemake pipelines.
|
2025-03-11 |
|
pysamstats
|
public |
A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.
|
2025-03-11 |
|
muat
|
public |
A package for Mutation Attention Tool
|
2025-03-11 |
|
amiga
|
public |
Analysis of Microbial Growth Assays
|
2025-03-11 |
|
meme
|
public |
Motif-based sequence analysis tools.
|
2025-03-11 |
|
gottcha2
|
public |
Genomic Origin Through Taxonomic CHAllenge (GOTTCHA) v2.
|
2025-03-10 |
|
haplotaglr
|
public |
Haplotagging individual long reads using known haplotype information.
|
2025-03-10 |
|
mgnify-pipelines-toolkit
|
public |
Collection of scripts and tools for MGnify pipelines.
|
2025-03-10 |
|
smallgenomeutilities
|
public |
A collection of scripts that are useful for dealing with viral RNA NGS data.
|
2025-03-10 |
|
presto
|
public |
A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
|
2025-03-10 |
|
crisprme
|
public |
CRISPRme, tool package for CRISPR experiments assessment and analysis.
|
2025-03-10 |
|
autobigs-cli
|
public |
A CLI tool to rapidly fetch fetch MLST profiles given sequences for various diseases.
|
2025-03-10 |
|
dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2025-03-10 |
|
gnparser
|
public |
GNparser normalises scientific names and extracts their semantic elements
|
2025-03-10 |
|
binette
|
public |
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
|
2025-03-10 |
|
perl-cgi
|
public |
A generic file fetching mechanism.
|
2025-03-10 |
|
revoluzer
|
public |
Genome rearrangement analysis tools
|
2025-03-10 |
|
scirpy
|
public |
A Scanpy extension for analyzing single-cell T-cell and B-cell receptor (TCR/BCR) sequencing data.
|
2025-03-10 |
|
tidk
|
public |
Identify and find telomeres, or telomeric repeats in a genome.
|
2025-03-10 |
|
hackgap
|
public |
hackgap (hash-based counting of k-mers with gaps) provides a fast jit-compiled k-kmer counter which supports gapped k-mers.
|
2025-03-10 |
|
jacusa2
|
public |
JACUSA2 is a framework for accurate variant assessment, detecting SNVs and arrest events in NGS data.
|
2025-03-10 |
|
aliview
|
public |
AliView is an intuitive and fast alignment viewer and editor for DNA and amino acid sequences.
|
2025-03-10 |
|
cleanifier
|
public |
A fast lightweight tool to remove contamination using k-mers.
|
2025-03-10 |
|
severus
|
public |
A tool for somatic structural variant calling using long reads
|
2025-03-10 |
|
hmftools-esvee
|
public |
Structural variant caller specialised for breakend-breakpoint calling.
|
2025-03-10 |
|
hmftools-linx
|
public |
LINX is an annotation, interpretation and visualisation tool for structural variants.
|
2025-03-10 |
|
hmftools-pave
|
public |
PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins.
|
2025-03-10 |
|
r-pathosurveilr
|
public |
Utilities for interacting with the pathogensurveillance pipeline.
|
2025-03-10 |
|
metafun
|
public |
Custom package for metafun workflow management
|
2025-03-10 |
|
grepq
|
public |
Quickly filter FASTQ files.
|
2025-03-09 |
|
olivar
|
public |
Olivar PCR tiling design
|
2025-03-09 |
|
captus
|
public |
Captus: Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
|
2025-03-09 |
|
artic
|
public |
ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore.
|
2025-03-09 |
|
pybwa
|
public |
Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa.
|
2025-03-08 |
|
galaxy-data
|
public |
The Galaxy models, datatype framework, and datatype implementations.
|
2025-03-08 |
