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cutesv
|
public |
cuteSV is a long-read based human genomic structural variation detection tool.
|
2025-09-09 |
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fusioncatcher
|
public |
Finder of Somatic Fusion Genes in RNA-seq data.
|
2025-09-09 |
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cats-rf
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public |
Reference-free transcriptome assembly quality assessment tool.
|
2025-09-09 |
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nextclade
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public |
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement.
|
2025-09-09 |
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flexiplex
|
public |
flexiplex: the flexible demultiplexer (filter barcodes by whitelist and inflection point)
|
2025-09-09 |
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grz-db
|
public |
SQL models for grz-cli and grz-watchdog
|
2025-09-09 |
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grzctl
|
public |
Control CLI for GRZ administrators.
|
2025-09-09 |
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samsum
|
public |
A light-weight python package for summarizing sequence coverage from SAM and BAM files
|
2025-09-09 |
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svdb
|
public |
structural variant database software
|
2025-09-09 |
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portcullis
|
public |
Splice junction analysis and filtering from BAM files
|
2025-09-09 |
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gbdraw
|
public |
A genome diagram generator for microbes and organelles.
|
2025-09-09 |
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locarna
|
public |
Multiple alignment of RNAs
|
2025-09-09 |
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rasusa
|
public |
Randomly subsample sequencing reads or alignments
|
2025-09-09 |
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pygtftk
|
public |
The gtftk suite providing facilities to manipulate genomic annotations in gtf format.
|
2025-09-09 |
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megalodon
|
public |
Nanopore modified base and sequence variant detection.
|
2025-09-09 |
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popdel
|
public |
Fast structural deletion calling on population-scale short read paired-end germline WGS data.
|
2025-09-09 |
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kaiju
|
public |
Fast and sensitive taxonomic classification for metagenomics
|
2025-09-09 |
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groot
|
public |
A tool for resistome profiling of metagenomic samples.
|
2025-09-09 |
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emu-pca
|
public |
EM-PCA for Ultra-low Coverage Sequencing Data.
|
2025-09-09 |
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bioconvert
|
public |
Convert between bioinformatics formats
|
2025-09-08 |
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cell2cell
|
public |
Inferring cell-cell interactions from transcriptomes with cell2cell.
|
2025-09-08 |
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wiggletools
|
public |
The WiggleTools package allows genomewide data files to be manipulated as numerical functions, equipped with all the standard functional analysis operators (sum, product, product by a scalar, comparators), and derived statistics (mean, median, variance, stddev, t-test, Wilcoxon's rank sum test, etc).
|
2025-09-08 |
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tgv
|
public |
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
|
2025-09-08 |
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pykofamsearch
|
public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
|
2025-09-08 |
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finaletoolkit
|
public |
Extract cfDNA fragmentation features from sequencing data.
|
2025-09-08 |
