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ucsc-getrna
|
public |
Get mrna for GenBank or RefSeq sequences found in a database
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2024-12-11 |
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ucsc-hgloadsqltab
|
public |
Load table into database from SQL and text files.
|
2024-12-11 |
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ucsc-faonerecord
|
public |
Extract a single record from a .FA file
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2024-12-11 |
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bx-python
|
public |
Tools for manipulating biological data, particularly multiple sequence alignments
|
2024-12-11 |
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dig2
|
public |
dig2 is a simple but flexible in silico digester of protein sequences in the FASTA format. It allows for almost any enzyme to be simulated, including MS/MS enzymes to generate CID or ECD/ETD fragments.
|
2024-12-11 |
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ssu-align
|
public |
SSU-ALIGN: structural alignment of SSU rRNA sequences
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2024-12-11 |
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occultercut
|
public |
A package for measuring the local GC-content bias in genomes and fungal species
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2024-12-11 |
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samcut
|
public |
samcut is `cut` for sam. Select (cut) columns from the output of `samtools view` using human-readale field names.
|
2024-12-11 |
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pandaseq
|
public |
No Summary
|
2024-12-11 |
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solexaqa
|
public |
Quality statistics and visual representations for second-generation sequencing data
|
2024-12-11 |
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sharg
|
public |
A modern argument parser for C++ tools.
|
2024-12-11 |
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biodiff
|
public |
exact comparison of biological sequences
|
2024-12-11 |
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seq-hasher
|
public |
Compute hash digests for DNA sequences in a FASTA file, with support for circular permutations
|
2024-12-11 |
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unitig-caller
|
public |
Determines presence/absence of sequence elements in bacterial sequence data.
|
2024-12-11 |
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bioconductor-mpra
|
public |
Analyze massively parallel reporter assays
|
2024-12-11 |
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pseqsid
|
public |
Calculates pairwise sequence identity, similarity and normalized similarity
score of proteins in a multiple sequence alignment.
|
2024-12-11 |
|
pixelator
|
public |
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
|
2024-12-11 |
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exomiser-rest-prioritiser
|
public |
Exomiser prioritiser REST API
|
2024-12-11 |
|
civicpy
|
public |
CIViC variant knowledgebase analysis toolkit.
|
2024-12-11 |
|
clark
|
public |
Fast, accurate and versatile k-mer based classification system
|
2024-12-10 |
|
seqstats
|
public |
Quick summary statistics on fasta/fastq(.gz) files
|
2024-12-10 |
|
roguenarok
|
public |
Phylogenetics - algorithm for the identification of rogue taxa in a tree set.
|
2024-12-10 |
|
guidescan
|
public |
GuideScan is a tool for genome-wide CRISPR guide RNA (gRNA) design and analysis in custom genomes.
|
2024-12-10 |
|
sherpas
|
public |
Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences.
|
2024-12-10 |
|
porechop
|
public |
Adapter removal and demultiplexing of Oxford Nanopore reads
|
2024-12-10 |
|
wfa2-lib
|
public |
Wavefront alignment algorithm library v2
|
2024-12-10 |
|
fermi-lite
|
public |
Fermi-lite is a standalone C library as well as a command-line tool for assembling Illumina short reads in regions from 100bp to 10 million bp in size.
|
2024-12-10 |
|
sts-smctc
|
public |
A C++ template class library for the efficient and convenient implementation of very general Sequential Monte Carlo algorithms.
|
2024-12-10 |
|
gecode
|
public |
Generic constraint development environment
|
2024-12-10 |
|
ucsc-liftover
|
public |
Move annotations from one assembly to another
|
2024-12-10 |
|
vargeno
|
public |
Fast SNP genotyping tool for whole genome sequence data and large SNP database.
|
2024-12-10 |
|
treemix
|
public |
TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations.
|
2024-12-10 |
|
libgff
|
public |
A simple "libraryfication" of the GFF/GTF parsing code that is used in GFFRead codebase.
|
2024-12-10 |
|
minirmd
|
public |
Remove duplicate and near-duplicate reads
|
2024-12-10 |
|
soapdenovo2-prepare
|
public |
SoapDenovo2 Data prepare module using assembled contig to do scaffold assembly
|
2024-12-10 |
|
ucsc-beditemoverlapcount
|
public |
count number of times a base is overlapped by the
|
2024-12-10 |
|
mindthegap
|
public |
MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome. MindTheGap can also be used as a genome assembly finishing tool, it can fill the gaps between a set of input contigs without any a priori on their relative order and orientation.
|
2024-12-10 |
|
ucsc-pslsort
|
public |
Merge and sort psCluster .psl output files
|
2024-12-10 |
|
sumaclust
|
public |
Sumaclust clusters sequences in a way that is fast and exact at the same time, using the same clustering algorithm as UCLUST and CD-HIT. For more information see url.
|
2024-12-10 |
|
ldhelmet
|
public |
Software program for statistical inference of fine-scale crossover recombination rates from population genetic data.
|
2024-12-10 |
|
cuttlefish
|
public |
Construction of the compacted de Bruijn graph efficiently
|
2024-12-10 |
|
super_distance
|
public |
Supertree method with distances
|
2024-12-10 |
|
r-pctgcdata
|
public |
Provides GC percentage of a 1 kilobase window at a genomic position for different builds of human and mouse genomes.
|
2024-12-10 |
|
ucsc-chainscore
|
public |
Remove chain-breaking alignments from chains that break nested chains.
|
2024-12-10 |
|
libgenome
|
public |
A C++ development library designed to make common operations on DNA and protein sequences easy. libGenome provides functionality to read, write, and manipulate sequence and annotation data in several file formats.
|
2024-12-10 |
|
align_it
|
public |
Align-it is a tool to align molecules according to their pharmacophores. A pharmacophore is an abstract concept based on the specific interactions observed in drug-receptor interactions: hydrogen bonding, charge transfer, electrostatic and hydrophobic interactions.
|
2024-12-10 |
|
idba_subasm
|
public |
Fork of IDBA with modifications to perform subassembly for the read cloud metagenomic assembler Athena
|
2024-12-10 |
|
ecoprimers
|
public |
No Summary
|
2024-12-10 |
|
slimm
|
public |
SLIMM - Species Level Identification of Microbes from Metagenomes
|
2024-12-10 |
|
moods
|
public |
MOODS: Motif Occurrence Detection Suite
|
2024-12-10 |
