| Package Name | Access | Summary | Updated |
|---|---|---|---|
| dartunifrac | public | DartUniFrac is an ultra-fast UniFrac algorithm that scales to millions of samples. It was designed based on optimal balanced parenthesis and Weighted MinHash sketching. | 2025-09-15 |
| cenplot | public | Centromere plotting library. | 2025-09-15 |
| cvanmf | public | Bi-cross validation of NMF and signature generation and analysis | 2025-09-15 |
| perl-mime-types | public | Definition of MIME types | 2025-09-15 |
| cogent3 | public | COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. | 2025-09-15 |
| tower-cli | public | The Tower CLI an interface to Nextflow Tower via the CLI. | 2025-09-15 |
| remag | public | Recovery of high-quality eukaryotic genomes from complex metagenomes | 2025-09-15 |
| dream-stellar | public | DREAM-Stellar: a fast and accurate pairwise local aligner. | 2025-09-15 |
| flexynesis | public | A deep-learning-based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction. | 2025-09-14 |
| r-pairadise | public | PAIRADISE - Paired Replicate Analysis of Differential Splicing Events | 2025-09-14 |
| x-mapper | public | Genomic sequence aligner | 2025-09-14 |
| snakemake-storage-plugin-s3 | public | A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.) | 2025-09-14 |
| perl-libwww-perl | public | The World-Wide Web library for Perl. | 2025-09-14 |
| snakemake-wrapper-utils | public | A collection of utility functions and classes for Snakemake wrappers. | 2025-09-14 |
| gsearch | public | gsearch is an ultra-fast and scalable microbial genome search program based on MinHash-like metrics and graph-based approximate nearest neighbor search | 2025-09-13 |
| tmb | public | This tool was designed to calculate a Tumor Mutational Burden (TMB) score from a VCF file. | 2025-09-13 |
| carveme | public | CarveMe: automated genome-scale metabolic model reconstruction | 2025-09-13 |
| nucflag | public | NucFlag misassembly identifier. | 2025-09-13 |
| atol-bpa-datamapper | public | Map data from the BPA data portal for AToL's Genome Engine. | 2025-09-13 |
| delve-bio | public | A variant caller for mixed infections | 2025-09-13 |
| vcf2maf | public | Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms. | 2025-09-13 |
| pangolin-data | public | Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments | 2025-09-13 |
| open-cravat | public | OpenCRAVAT - variant analysis toolkit | 2025-09-13 |
| eggnog-mapper | public | Fast genome-wide functional annotation through orthology assignment. | 2025-09-13 |
| captus | public | Captus: Assembly of Phylogenomic Datasets from High-Throughput Sequencing data. | 2025-09-13 |
